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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for OmpR

Z-value: 1.53

Transcription factors associated with OmpR

Gene Symbol Gene ID Gene Info
ompR OmpR transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ompR0.811.5e-02Click!

Activity profile of OmpR motif

Sorted Z-values of OmpR motif

Promoter Log-likelihood Transcript Gene Gene Info
nmpC 8.73 outer membrane porin protein; locus of qsr prophage
ompF 8.57 outer membrane porin F
micF 7.47 MicF
sra 6.29 30S ribosomal subunit protein S22
ompC 5.93 outer membrane protein C
flhDC 3.71 FlhC transcriptional dual regulator
FlhD transcriptional dual regulator
bolA 1.93 BolA DNA-binding transcriptional dual regulator
fadL 1.39 long-chain fatty acid outer membrane porin; bacteriophage T2 receptor
ecnB 0.88 bacteriolytic entericidin B lipoprotein

Network of associatons between targets according to the STRING database.

First level regulatory network of OmpR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 5.9 GO:0015748 organophosphate ester transport(GO:0015748)
1.0 8.6 GO:0006855 drug transmembrane transport(GO:0006855)
0.2 1.4 GO:0006869 lipid transport(GO:0006869)
0.0 3.5 GO:0097659 transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.7 8.6 GO:0046930 pore complex(GO:0046930)
0.8 5.9 GO:0045203 integral component of cell outer membrane(GO:0045203)
0.4 6.3 GO:0022627 small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627)
0.2 0.9 GO:0031225 anchored component of membrane(GO:0031225)
0.1 2.7 GO:0009279 cell outer membrane(GO:0009279)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.9 8.6 GO:0022885 bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912)
0.8 10.1 GO:0015288 porin activity(GO:0015288) wide pore channel activity(GO:0022829)