ISMARA results: OmpR

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

Navigation

Downloads

Results for OmpR

Z-value: 1.53

Transcription factors associated with OmpR

Gene Symbol	Gene ID	Gene Info
ompR RegulonDB EcoCyc	ompR	OmpR transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ompR		0.81	1.5e-02	Click!

Activity profile of OmpR motif

Sorted Z-values of OmpR motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Gene	Gene Info
nmpC Show fit	8.73	nmpC RegulonDB EcoCyc Show fit	outer membrane porin protein; locus of qsr prophage
ompF Show fit	8.57	ompF RegulonDB EcoCyc Show fit	outer membrane porin F
micF Show fit	7.47	micF RegulonDB EcoCyc Show fit	MicF
sra Show fit	6.29	sra RegulonDB EcoCyc Show fit	30S ribosomal subunit protein S22
ompC Show fit	5.93	ompC RegulonDB EcoCyc Show fit	outer membrane protein C
flhDC Show fit	3.71	flhC RegulonDB EcoCyc Show fit flhD RegulonDB EcoCyc Show fit	FlhC transcriptional dual regulator FlhD transcriptional dual regulator
bolA Show fit	1.93	bolA RegulonDB EcoCyc Show fit	BolA DNA-binding transcriptional dual regulator
fadL Show fit	1.39	fadL RegulonDB EcoCyc Show fit	long-chain fatty acid outer membrane porin; bacteriophage T2 receptor
ecnB Show fit	0.88	ecnB RegulonDB EcoCyc Show fit	bacteriolytic entericidin B lipoprotein

Showing 1 to 9 of 9 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of OmpR

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.0	8.6	GO:0006855	drug transmembrane transport(GO:0006855)
1.5	5.9	GO:0015748	organophosphate ester transport(GO:0015748)
0.0	3.5	GO:0097659	transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)
0.2	1.4	GO:0006869	lipid transport(GO:0006869)

Showing 1 to 4 of 4 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.7	8.6	GO:0046930	pore complex(GO:0046930)
0.4	6.3	GO:0022627	small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627)
0.8	5.9	GO:0045203	integral component of cell outer membrane(GO:0045203)
0.1	2.7	GO:0009279	cell outer membrane(GO:0009279)
0.2	0.9	GO:0031225	anchored component of membrane(GO:0031225)

Showing 1 to 5 of 5 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	10.1	GO:0015288	porin activity(GO:0015288) wide pore channel activity(GO:0022829)
2.9	8.6	GO:0022885	bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912)

Showing 1 to 2 of 2 entries

Results for OmpR

Z-value: 1.53

Transcription factors associated with OmpR

Activity-expression correlation:

Activity profile of OmpR motif

Sorted Z-values of OmpR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of OmpR

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: