ISMARA results: AllR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for AllR

Gene Symbol	Gene ID	Gene Info
allR RegulonDB EcoCyc	allR	AllR DNA-binding transcriptional repressor

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Promoter	Log-likelihood	Gene	Gene Info
gcl-hyi-glxR-ybbW-allB-ybbY-glxK Show fit	5.50	allB RegulonDB EcoCyc Show fit glxK RegulonDB EcoCyc Show fit hyi RegulonDB EcoCyc Show fit gcl RegulonDB EcoCyc Show fit glxR RegulonDB EcoCyc Show fit ybbY RegulonDB EcoCyc Show fit ybbW RegulonDB EcoCyc Show fit	allantoinase glycerate kinase II hydroxypyruvate isomerase glyoxylate carboligase tartronate semialdehyde reductase 2 putative transport protein, nucleobase:cation symporter-2 (NCS2) family putative transporter, nucleobase:cation symporter-1 (NCS1) family
allS Show fit	5.05	allS RegulonDB EcoCyc Show fit	AllS transcriptional activator
allA Show fit	1.60	allA RegulonDB EcoCyc Show fit	ureidoglycolate lyase

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Log-likelihood per target	Total log-likelihood	Term	Description
1.8	5.5	GO:0006145	purine nucleobase catabolic process(GO:0006145)
0.1	5.1	GO:0051254	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	5.5	GO:0005887	integral component of plasma membrane(GO:0005887)

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Log-likelihood per target	Total log-likelihood	Term	Description
1.4	5.5	GO:0016812	nucleobase transmembrane transporter activity(GO:0015205) oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.1	5.1	GO:0043565	sequence-specific DNA binding(GO:0043565)
0.5	1.6	GO:0016842	amidine-lyase activity(GO:0016842)

Showing 1 to 3 of 3 entries