ISMARA results: NanR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for NanR

Gene Symbol	Gene ID	Gene Info
nanR RegulonDB EcoCyc	nanR	NanR DNA-binding transcriptional dual regulator

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Promoter	Log-likelihood	Gene	Gene Info
nanCMS Show fit	7.18	nanC RegulonDB EcoCyc Show fit nanM RegulonDB EcoCyc Show fit nanS RegulonDB EcoCyc Show fit	N-acetylneuraminic acid outer membrane channel N-acetylneuraminate mutarotase probable 9-O-acetyl-N-acetylneuraminate esterase
nanCM Show fit	7.05	nanC RegulonDB EcoCyc Show fit nanM RegulonDB EcoCyc Show fit	N-acetylneuraminic acid outer membrane channel N-acetylneuraminate mutarotase
yjhBC Show fit	5.56	yjhC RegulonDB EcoCyc Show fit yjhB RegulonDB EcoCyc Show fit	KpLE2 phage-like element; predicted oxidoreductase putative transport protein, major facilitator superfamily
nanATEK-yhcH Show fit	3.89	nanA RegulonDB EcoCyc Show fit nanK RegulonDB EcoCyc Show fit nanE RegulonDB EcoCyc Show fit nanT RegulonDB EcoCyc Show fit yhcH RegulonDB EcoCyc Show fit	N-acetylneuraminate lyase N-acetylmannosamine kinase predicted N-acetylmannosamine-6-phosphate epimerase N-acetylneuraminate:H⁺ symporter conserved protein
nanA Show fit	1.32	nanA RegulonDB EcoCyc Show fit	N-acetylneuraminate lyase

Showing 1 to 5 of 5 entries

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Log-likelihood per target	Total log-likelihood	Term	Description
1.3	14.2	GO:0015772	oligosaccharide transport(GO:0015772)
0.9	5.6	GO:0015992	hydrogen transport(GO:0006818) proton transport(GO:0015992)
1.3	5.2	GO:0006054	N-acetylneuraminate metabolic process(GO:0006054) N-acetylneuraminate catabolic process(GO:0019262)

Showing 1 to 3 of 3 entries

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Log-likelihood per target	Total log-likelihood	Term	Description
1.8	14.2	GO:0045203	integral component of cell outer membrane(GO:0045203)
0.0	9.4	GO:0005886	plasma membrane(GO:0005886)

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Log-likelihood per target	Total log-likelihood	Term	Description
6.0	18.1	GO:0015136	sialic acid transmembrane transporter activity(GO:0015136)
0.1	5.6	GO:0046943	organic acid transmembrane transporter activity(GO:0005342) carboxylic acid transmembrane transporter activity(GO:0046943)
0.2	1.3	GO:0016833	oxo-acid-lyase activity(GO:0016833)

Showing 1 to 3 of 3 entries