GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
csgD Links RegulonDB EcoCyc	csgD	CsgD DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
csgD		0.94	4.4e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nlpA Show fit	6.64		nlpA Links RegulonDB EcoCyc Show fit	lipoprotein-28
yccT Show fit	4.31		yccT Links RegulonDB EcoCyc Show fit	conserved protein
iraP Show fit	2.53		iraP Links RegulonDB EcoCyc Show fit	anti-adaptor protein for σS stabilization
csgDEFG Show fit	2.48		csgG Links RegulonDB EcoCyc Show fit csgF Links RegulonDB EcoCyc Show fit csgE Links RegulonDB EcoCyc Show fit csgD Links RegulonDB EcoCyc Show fit	curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator
csgBAC Show fit	2.46		csgC Links RegulonDB EcoCyc Show fit csgB Links RegulonDB EcoCyc Show fit csgA Links RegulonDB EcoCyc Show fit	inhibitor of CsgA amyloid formation curlin, minor subunit curlin, major subunit
dgcC Show fit	2.13		dgcC Links RegulonDB EcoCyc Show fit	diguanylate cyclase
fliE Show fit	0.86		fliE Links RegulonDB EcoCyc Show fit	flagellar basal-body protein FliE
flgMN Show fit	0.60		flgN Links RegulonDB EcoCyc Show fit flgM Links RegulonDB EcoCyc Show fit	flagellar biosynthesis protein FlgN anti-sigma factor for FliA (σ28)
fliFGHIJK Show fit	0.20		fliI Links RegulonDB EcoCyc Show fit fliH Links RegulonDB EcoCyc Show fit fliK Links RegulonDB EcoCyc Show fit fliJ Links RegulonDB EcoCyc Show fit fliG Links RegulonDB EcoCyc Show fit fliF Links RegulonDB EcoCyc Show fit	flagellum-specific ATP synthase FliI flagellar biosynthesis protein FliH flagellar hook-length control protein FliK flagellar biosynthesis protein FliJ flagellar motor switch protein FliG flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.9	5.1	GO:0000101	sulfur amino acid transport(GO:0000101)
0.8	2.5	GO:0009895	negative regulation of catabolic process(GO:0009895) regulation of protein catabolic process(GO:0042176) negative regulation of protein catabolic process(GO:0042177)
0.5	4.9	GO:0022610	biological adhesion(GO:0022610)
0.1	0.6	GO:0030162	regulation of proteolysis(GO:0030162)
0.0	0.2	GO:0044780	bacterial-type flagellum assembly(GO:0044780) bacterial-type flagellum organization(GO:0044781)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.7	GO:0042995	cell projection(GO:0042995)
0.3	2.5	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
0.0	6.6	GO:0005886	plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.5	GO:0043856	anti-sigma factor antagonist activity(GO:0043856)
0.5	2.1	GO:0052621	diguanylate cyclase activity(GO:0052621)
0.1	2.5	GO:0001159	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)