ISMARA results: StpA

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for StpA

Z-value: 0.49

Transcription factors associated with StpA

Gene Symbol	Gene ID	Gene Info
stpA RegulonDB EcoCyc	stpA	DNA-binding transcriptional repressor StpA with RNA chaperone activity

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
stpA		0.11	8.0e-01	Click!

Activity profile of StpA motif

Sorted Z-values of StpA motif

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Promoter	Log-likelihood	Gene	Gene Info
ssrS-fau Show fit	2.10	ssrS RegulonDB EcoCyc Show fit fau RegulonDB EcoCyc Show fit	6S RNA 5-formyltetrahydrofolate cyclo-ligase
leuO Show fit	0.93	leuO RegulonDB EcoCyc Show fit	LeuO DNA-binding transcriptional dual regulator
bglG Show fit	0.44	bglG RegulonDB EcoCyc Show fit	BglG transcriptional antiterminator
stpA Show fit	0.14	stpA RegulonDB EcoCyc Show fit	H-NS-like DNA-binding transcriptional repressor with RNA chaperone activity

Showing 1 to 4 of 4 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of StpA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.7	2.1	GO:0035999	tetrahydrofolate interconversion(GO:0035999)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.1	GO:0016882	cyclo-ligase activity(GO:0016882)

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Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.7	2.1	REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX	Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex

Showing 1 to 1 of 1 entries

Results for StpA

Z-value: 0.49

Transcription factors associated with StpA

Activity-expression correlation:

Activity profile of StpA motif

Sorted Z-values of StpA motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of StpA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: