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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for StpA
Z-value: 0.49
Transcription factors associated with StpA
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
stpA
|
stpA | DNA-binding transcriptional repressor StpA with RNA chaperone activity |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| stpA | 0.11 | 8.0e-01 | Click! |
Activity profile of StpA motif
Sorted Z-values of StpA motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| ssrS-fau | 2.10 |
ssrS
fau
|
6S RNA 5-formyltetrahydrofolate cyclo-ligase |
|
| leuO | 0.93 |
leuO
|
LeuO DNA-binding transcriptional dual regulator |
|
| bglG | 0.44 |
bglG
|
BglG transcriptional antiterminator |
|
| stpA | 0.14 |
stpA
|
H-NS-like DNA-binding transcriptional repressor with RNA chaperone activity |
Network of associatons between targets according to the STRING database.
First level regulatory network of StpA
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.1 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.1 | GO:0016882 | cyclo-ligase activity(GO:0016882) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.1 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |