ISMARA results: BaeR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for BaeR

Z-value: 0.64

Transcription factors associated with BaeR

Gene Symbol	Gene ID	Gene Info
baeR RegulonDB EcoCyc	baeR	BaeR transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
baeR		0.48	2.3e-01	Click!

Activity profile of BaeR motif

Sorted Z-values of BaeR motif

Top targets:

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Promoter	Log-likelihood	Gene	Gene Info
spy Show fit	2.26	spy RegulonDB EcoCyc Show fit	ATP-independent periplasmic chaperone
acrD Show fit	1.61	acrD RegulonDB EcoCyc Show fit	AcrAD-TolC multidrug efflux pump - permease subunit
mdtABCD-baeSR Show fit	1.59	baeR RegulonDB EcoCyc Show fit baeS RegulonDB EcoCyc Show fit mdtC RegulonDB EcoCyc Show fit mdtB RegulonDB EcoCyc Show fit mdtA RegulonDB EcoCyc Show fit mdtD RegulonDB EcoCyc Show fit	BaeR transcriptional activator BaeS sensory histidine kinase MdtABC-TolC multidrug efflux pump - membrane subunit MdtABC-TolC multidrug efflux pump - membrane subunit MdtABC-TolC multidrug efflux pump - putative membrane fusion protein putative transport protein, major facilitator superfamily (MFS)

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Network of associatons between targets according to the STRING database.

First level regulatory network of BaeR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.3	GO:0061077	chaperone-mediated protein folding(GO:0061077)
0.5	1.6	GO:0048583	regulation of response to stimulus(GO:0048583)
0.2	1.6	GO:0006855	drug transmembrane transport(GO:0006855)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.3	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.1	3.2	GO:0015307	drug:proton antiporter activity(GO:0015307)
0.2	2.3	GO:0051082	unfolded protein binding(GO:0051082)

Showing 1 to 2 of 2 entries

Results for BaeR

Z-value: 0.64

Transcription factors associated with BaeR

Activity-expression correlation:

Activity profile of BaeR motif

Sorted Z-values of BaeR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of BaeR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: