Project
GSE55662: Plasticity of transcriptional regulation under antibiotic stress
Navigation
Downloads
Results for PhoP
Z-value: 1.02
Transcription factors associated with PhoP
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| phoP | 0.04 | 9.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| treR Show fit | 4.64 |
TreR DNA-binding transcriptional repressor |
||
| iraM Show fit | 4.31 |
inhibitor of σS proteolysis |
||
| pagP Show fit | 1.79 |
palmitoyl transferase for Lipid A |
||
| dcuD Show fit | 1.69 |
putative transport protein, C4-dicarboxylate uptake C family |
||
| safA-ydeO Show fit | 1.68 |
YdeO DNA-binding transcriptional dual regulator two-component system connector protein |
||
| ompT Show fit | 1.26 |
outer membrane protease VII (outer membrane protein 3b) |
||
| mgtLA Show fit | 1.22 |
Mg2+ / Ni2+ transporting ATPase predicted leader peptide |
||
| purHD Show fit | 1.01 |
AICAR transformylase/IMP cyclohydrolase phosphoribosylamine-glycine ligase |
||
| phoPQ Show fit | 0.83 |
PhoQ sensory histidine kinase PhoP |
||
| malS Show fit | 0.75 |
α-amylase |
Network of associatons between targets according to the STRING database.
First level regulatory network of PhoP
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 5.1 | GO:0010350 | cellular response to magnesium starvation(GO:0010350) |
| 0.1 | 4.6 | GO:1903507 | negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507) |
| 0.1 | 1.8 | GO:0046493 | lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) |
| 0.2 | 1.7 | GO:0015740 | C4-dicarboxylate transport(GO:0015740) |
| 0.0 | 1.7 | GO:0051254 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
| 0.1 | 1.3 | GO:0006508 | proteolysis(GO:0006508) |
| 0.2 | 1.2 | GO:0031556 | transcriptional attenuation by ribosome(GO:0031556) |
| 0.1 | 1.0 | GO:0006164 | purine nucleotide biosynthetic process(GO:0006164) |
| 0.3 | 0.8 | GO:0030980 | alpha-glucan metabolic process(GO:0030978) alpha-glucan catabolic process(GO:0030980) |
| 0.0 | 0.7 | GO:2001141 | regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 1.3 | GO:0031230 | intrinsic component of cell outer membrane(GO:0031230) |
| 0.3 | 1.2 | GO:0043231 | membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231) |
| 0.0 | 0.6 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
| 0.0 | 0.5 | GO:0016021 | integral component of membrane(GO:0016021) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.9 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 1.1 | 4.3 | GO:0043856 | anti-sigma factor antagonist activity(GO:0043856) |
| 0.2 | 1.8 | GO:0008374 | O-acyltransferase activity(GO:0008374) |
| 0.2 | 1.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 1.2 | GO:0019829 | cation-transporting ATPase activity(GO:0019829) |
| 0.1 | 1.2 | GO:0004673 | phosphorelay sensor kinase activity(GO:0000155) protein histidine kinase activity(GO:0004673) |
| 0.3 | 1.0 | GO:0019238 | cyclohydrolase activity(GO:0019238) |
| 0.1 | 0.8 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 0.2 | GO:0004497 | monooxygenase activity(GO:0004497) pyrimidine nucleobase transmembrane transporter activity(GO:0005350) |
| 0.0 | 0.1 | GO:0050380 | undecaprenyl-diphosphatase activity(GO:0050380) |