ISMARA results: AdiY

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for AdiY

Z-value: 0.99

Transcription factors associated with AdiY

Gene Symbol	Gene ID	Gene Info
adiY RegulonDB EcoCyc	adiY	AdiY DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
adiY		-0.93	9.0e-04	Click!

Activity profile of AdiY motif

Sorted Z-values of AdiY motif

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Promoter	Log-likelihood	Gene	Gene Info
gadAX Show fit	5.74	gadX RegulonDB EcoCyc Show fit gadA RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator glutamate decarboxylase A subunit
gadBC Show fit	4.41	gadB RegulonDB EcoCyc Show fit gadC RegulonDB EcoCyc Show fit	glutamate decarboxylase B subunit glutamic acid:4-aminobutyrate antiporter
adiA Show fit	3.66	adiA RegulonDB EcoCyc Show fit	arginine decarboxylase, degradative
gltBDF Show fit	0.19	gltB RegulonDB EcoCyc Show fit gltD RegulonDB EcoCyc Show fit gltF RegulonDB EcoCyc Show fit	glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein

Showing 1 to 4 of 4 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AdiY

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
3.5	13.8	GO:0045852	pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.1	0.2	GO:0019676	ammonia assimilation cycle(GO:0019676)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	14.0	GO:0005829	cytosol(GO:0005829)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.7	13.8	GO:0016831	carboxy-lyase activity(GO:0016831)
0.0	0.2	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638)

Showing 1 to 2 of 2 entries

Results for AdiY

Z-value: 0.99

Transcription factors associated with AdiY

Activity-expression correlation:

Activity profile of AdiY motif

Sorted Z-values of AdiY motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AdiY

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: