ISMARA results: UxuR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for UxuR

Z-value: 0.83

Transcription factors associated with UxuR

Gene Symbol	Gene ID	Gene Info
uxuR RegulonDB EcoCyc	uxuR	UxuR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
uxuR		0.44	2.8e-01	Click!

Activity profile of UxuR motif

Sorted Z-values of UxuR motif

Top targets:

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Promoter	Log-likelihood	Gene	Gene Info
gntP Show fit	3.05	gntP RegulonDB EcoCyc Show fit	gluconate / fructuronate transporter GntP
lgoR Show fit	3.04	lgoR RegulonDB EcoCyc Show fit	predicted DNA-binding transcriptional regulator
uidABC Show fit	1.76	uidB RegulonDB EcoCyc Show fit uidC RegulonDB EcoCyc Show fit uidA RegulonDB EcoCyc Show fit	glucuronide:H⁺ symporter outer membrane-associated protein β-D-glucuronidase
uxuAB Show fit	1.45	uxuA RegulonDB EcoCyc Show fit uxuB RegulonDB EcoCyc Show fit	D-mannonate dehydratase D-mannonate oxidoreductase
uxuR Show fit	1.03	uxuR RegulonDB EcoCyc Show fit	UxuR DNA-binding transcriptional repressor

Showing 1 to 5 of 5 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of UxuR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.0	3.0	GO:0042873	aldonate transport(GO:0042873)
0.5	3.0	GO:0019520	aldonic acid metabolic process(GO:0019520) aldonic acid catabolic process(GO:0046176)
0.2	1.8	GO:1901658	glycosyl compound catabolic process(GO:1901658)
0.5	1.4	GO:0006063	uronic acid metabolic process(GO:0006063)

Showing 1 to 4 of 4 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.0	GO:0005887	integral component of plasma membrane(GO:0005887)
0.4	1.8	GO:0043227	membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.6	3.0	GO:0015128	gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879)
0.1	1.8	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553)
0.1	1.4	GO:0008198	ferrous iron binding(GO:0008198)

Showing 1 to 3 of 3 entries

Results for UxuR

Z-value: 0.83

Transcription factors associated with UxuR

Activity-expression correlation:

Activity profile of UxuR motif

Sorted Z-values of UxuR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of UxuR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: