ISMARA results: RcnR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for RcnR

Z-value: 1.04

Transcription factors associated with RcnR

Gene Symbol	Gene ID	Gene Info
rcnR RegulonDB EcoCyc	rcnR	RcnR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rcnR		0.99	1.2e-06	Click!

Activity profile of RcnR motif

Sorted Z-values of RcnR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
rcnR Show fit	9.47		rcnR RegulonDB EcoCyc Show fit	RcnR DNA-binding transcriptional repressor
rcnAB Show fit	5.24		rcnB RegulonDB EcoCyc Show fit rcnA RegulonDB EcoCyc Show fit	periplasmic protein involved in nickel/cobalt export Ni²⁺/Co²⁺ exporter

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Network of associatons between targets according to the STRING database.

First level regulatory network of RcnR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	9.5	GO:1903507	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
1.7	5.2	GO:0072507	nickel cation transport(GO:0015675) nickel cation transmembrane transport(GO:0035444) divalent inorganic cation homeostasis(GO:0072507)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	5.2	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.3	5.2	GO:0015099	nickel cation transmembrane transporter activity(GO:0015099)

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Results for RcnR

Z-value: 1.04

Transcription factors associated with RcnR

Activity-expression correlation:

Activity profile of RcnR motif

Sorted Z-values of RcnR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of RcnR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: