ISMARA results: MetR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for MetR

Z-value: 0.35

Transcription factors associated with MetR

Gene Symbol	Gene ID	Gene Info
metR RegulonDB EcoCyc	metR	MetR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
metR		0.08	8.4e-01	Click!

Activity profile of MetR motif

Sorted Z-values of MetR motif

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Promoter	Log-likelihood	Gene	Gene Info
hmp Show fit	1.07	hmp RegulonDB EcoCyc Show fit	nitric oxide dioxygenase
metH Show fit	0.99	metH RegulonDB EcoCyc Show fit	cobalamin-dependent methionine synthase
metR Show fit	0.44	metR RegulonDB EcoCyc Show fit	MetR DNA-binding transcriptional dual regulator
metE Show fit	0.24	metE RegulonDB EcoCyc Show fit	cobalamin-independent homocysteine transmethylase

Showing 1 to 4 of 4 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of MetR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	1.2	GO:0035999	tetrahydrofolate interconversion(GO:0035999)
0.4	1.1	GO:0046209	nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0005576	extracellular region(GO:0005576)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.2	GO:0008172	S-methyltransferase activity(GO:0008172)
0.3	1.1	GO:0051213	hydroperoxide reductase activity(GO:0032843) dioxygenase activity(GO:0051213)
0.0	0.4	GO:0016597	amino acid binding(GO:0016597)

Showing 1 to 3 of 3 entries

Results for MetR

Z-value: 0.35

Transcription factors associated with MetR

Activity-expression correlation:

Activity profile of MetR motif

Sorted Z-values of MetR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of MetR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: