ISMARA results: AraC

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for AraC

Z-value: 0.72

Transcription factors associated with AraC

Gene Symbol	Gene ID	Gene Info
araC RegulonDB EcoCyc	araC	AraC DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
araC		-0.77	2.7e-02	Click!

Activity profile of AraC motif

Sorted Z-values of AraC motif

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Promoter	Log-likelihood	Gene	Gene Info
araJ Show fit	2.94	araJ RegulonDB EcoCyc Show fit	putative transport protein, major facilitator superfamily
araBAD Show fit	2.72	araB RegulonDB EcoCyc Show fit araA RegulonDB EcoCyc Show fit araD RegulonDB EcoCyc Show fit	L-ribulokinase L-arabinose isomerase L-ribulose 5-phosphate 4-epimerase
araE Show fit	2.58	araE RegulonDB EcoCyc Show fit	arabinose:H⁺ symporter
araE-ygeA Show fit	1.57	ygeA RegulonDB EcoCyc Show fit araE RegulonDB EcoCyc Show fit	predicted racemase arabinose:H⁺ symporter
araFGH Show fit	0.75	araF RegulonDB EcoCyc Show fit araG RegulonDB EcoCyc Show fit araH RegulonDB EcoCyc Show fit	arabinose ABC transporter - periplasmic binding protein arabinose ABC transporter - ATP binding subunit arabinose ABC transporter - membrane subunit

Showing 1 to 5 of 5 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AraC

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.6	4.9	GO:0042882	L-arabinose transport(GO:0042882)
0.9	2.7	GO:0019324	L-lyxose metabolic process(GO:0019324)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.1	GO:0005887	integral component of plasma membrane(GO:0005887)
0.0	2.9	GO:0005886	plasma membrane(GO:0005886)
0.1	0.8	GO:0055052	ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052)

Showing 1 to 3 of 3 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.6	4.9	GO:0015147	L-arabinose transmembrane transporter activity(GO:0015147)
0.9	2.7	GO:0008742	L-ribulose-phosphate 4-epimerase activity(GO:0008742)

Showing 1 to 2 of 2 entries

Results for AraC

Z-value: 0.72

Transcription factors associated with AraC

Activity-expression correlation:

Activity profile of AraC motif

Sorted Z-values of AraC motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AraC

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: