ISMARA results: DsdC

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for DsdC

Z-value: 0.96

Transcription factors associated with DsdC

Gene Symbol	Gene ID	Gene Info
dsdC RegulonDB EcoCyc	dsdC	DsdC DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
dsdC		0.97	6.8e-05	Click!

Activity profile of DsdC motif

Sorted Z-values of DsdC motif

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Promoter	Log-likelihood	Gene	Gene Info
dsdC Show fit	6.84	dsdC RegulonDB EcoCyc Show fit	DsdC DNA-binding transcriptional dual regulator
dsdXA Show fit	3.32	dsdA RegulonDB EcoCyc Show fit dsdX RegulonDB EcoCyc Show fit	D-serine ammonia-lyase D-serine transporter
dsdA Show fit	1.20	dsdA RegulonDB EcoCyc Show fit	D-serine ammonia-lyase

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of DsdC

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	6.8	GO:0097659	transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)
1.5	4.5	GO:0019478	D-amino acid catabolic process(GO:0019478)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.3	GO:0005887	integral component of plasma membrane(GO:0005887)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	6.8	GO:0043565	sequence-specific DNA binding(GO:0043565)
0.7	3.3	GO:0042879	gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879)
0.2	1.2	GO:0016841	ammonia-lyase activity(GO:0016841)

Showing 1 to 3 of 3 entries

Results for DsdC

Z-value: 0.96

Transcription factors associated with DsdC

Activity-expression correlation:

Activity profile of DsdC motif

Sorted Z-values of DsdC motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of DsdC

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: