ISMARA results: TreR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for TreR

Z-value: 0.95

Transcription factors associated with TreR

Gene Symbol	Gene ID	Gene Info
treR RegulonDB EcoCyc	treR	TreR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
treR		-0.61	1.1e-01	Click!

Activity profile of TreR motif

Sorted Z-values of TreR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
treBC Show fit	13.49		treC RegulonDB EcoCyc Show fit treB RegulonDB EcoCyc Show fit	trehalose-6-phosphate hydrolase trehalose PTS permease - TreB subunit

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Network of associatons between targets according to the STRING database.

First level regulatory network of TreR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
4.5	13.5	GO:0005993	trehalose catabolic process(GO:0005993)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	13.5	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
4.5	13.5	GO:0015927	trehalase activity(GO:0015927)

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Results for TreR

Z-value: 0.95

Transcription factors associated with TreR

Activity-expression correlation:

Activity profile of TreR motif

Sorted Z-values of TreR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of TreR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: