GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
pgrR Links RegulonDB EcoCyc	pgrR	PgrR DNA-binding transcriptional repressor

Promoter	Log-likelihood	Transcript	Gene	Gene Info
ycjY Show fit	13.64		ycjY Links RegulonDB EcoCyc Show fit	predicted hydrolase
ycjY-ymjDC-mpaA Show fit	10.30		ymjD Links RegulonDB EcoCyc Show fit mpaA Links RegulonDB EcoCyc Show fit ycjY Links RegulonDB EcoCyc Show fit ymjC Links RegulonDB EcoCyc Show fit	small protein murein tripeptide amidase A predicted hydrolase predicted oxidoreductase
ycjXF-tyrR Show fit	8.25		tyrR Links RegulonDB EcoCyc Show fit ycjX Links RegulonDB EcoCyc Show fit ycjF Links RegulonDB EcoCyc Show fit	TyrR DNA-binding transcriptional dual regulator conserved protein conserved inner membrane protein
tyrR Show fit	4.86		tyrR Links RegulonDB EcoCyc Show fit	TyrR DNA-binding transcriptional dual regulator
ycjG Show fit	0.95		ycjG Links RegulonDB EcoCyc Show fit	L-Ala-D/L-Glu epimerase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	10.3	GO:0006027	aminoglycan catabolic process(GO:0006026) glycosaminoglycan catabolic process(GO:0006027) peptidoglycan catabolic process(GO:0009253) peptide catabolic process(GO:0043171)
0.5	13.6	GO:0051301	cell division(GO:0051301)
0.2	13.1	GO:1902679	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	23.4	GO:0005737	cytoplasm(GO:0005737)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	10.3	GO:0008235	metalloexopeptidase activity(GO:0008235)
0.2	1.0	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives(GO:0016855)
0.2	13.1	GO:0005524	ATP binding(GO:0005524)