ISMARA results: TdcA

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for TdcA

Z-value: 0.76

Transcription factors associated with TdcA

Gene Symbol	Gene ID	Gene Info
tdcA RegulonDB EcoCyc	tdcA	TdcA DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
tdcA		1.00	3.6e-08	Click!

Activity profile of TdcA motif

Sorted Z-values of TdcA motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
tdcABCDEFG Show fit	8.68		tdcE RegulonDB EcoCyc Show fit tdcD RegulonDB EcoCyc Show fit tdcG RegulonDB EcoCyc Show fit tdcF RegulonDB EcoCyc Show fit tdcA RegulonDB EcoCyc Show fit tdcC RegulonDB EcoCyc Show fit tdcB RegulonDB EcoCyc Show fit	2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive propionate kinase L-serine deaminase III predicted enamine/imine deaminase TdcA DNA-binding transcriptional activator serine / threonine:H⁺ symporter TdcC catabolic threonine dehydratase

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Network of associatons between targets according to the STRING database.

First level regulatory network of TdcA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.9	8.7	GO:0006565	L-serine catabolic process(GO:0006565)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	8.7	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.2	8.7	GO:0008861	formate C-acetyltransferase activity(GO:0008861)

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Results for TdcA

Z-value: 0.76

Transcription factors associated with TdcA

Activity-expression correlation:

Activity profile of TdcA motif

Sorted Z-values of TdcA motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of TdcA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: