ISMARA results: AgaR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for AgaR

Z-value: 0.97

Transcription factors associated with AgaR

Gene Symbol	Gene ID	Gene Info
agaR RegulonDB EcoCyc	agaR	AgaR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
agaR		-0.62	1.0e-01	Click!

Activity profile of AgaR motif

Sorted Z-values of AgaR motif

Top targets:

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Promoter	Log-likelihood	Gene	Gene Info
agaS-kbaY-agaBCDI Show fit	7.87	agaC RegulonDB EcoCyc Show fit agaB RegulonDB EcoCyc Show fit kbaY RegulonDB EcoCyc Show fit agaD RegulonDB EcoCyc Show fit agaI RegulonDB EcoCyc Show fit agaS RegulonDB EcoCyc Show fit	galactosamine PTS permease (cryptic) - AgaC subunit galactosamine PTS permease (cryptic) - AgaB subunit tagatose-1,6-bisphosphate aldolase 1 subunit KbaY galactosamine PTS permease (cryptic) - AgaD subunit predicted galactosamine-6-phosphate isomerase putative tagatose-6-phosphate aldose/ketose isomerase
kbaZ-agaVWA Show fit	3.16	agaA RegulonDB EcoCyc Show fit agaW RegulonDB EcoCyc Show fit agaV RegulonDB EcoCyc Show fit kbaZ RegulonDB EcoCyc Show fit	predicted truncated N-acetylgalactosamine-6-phosphate deacetylase N-acetyl-D-galactosamine PTS permease (cryptic) - AgaW subunit (pseudogene) N-acetyl-D-galactosamine PTS permease (cryptic) - AgaV subunit tagatose-1,6-bisphosphate aldolase 1 subunit KbaZ
agaR Show fit	0.89	agaR RegulonDB EcoCyc Show fit	AgaR DNA-binding transcriptional repressor

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AgaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.8	11.0	GO:0034219	carbohydrate transmembrane transport(GO:0034219)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	11.0	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.5	7.9	GO:0016832	aldehyde-lyase activity(GO:0016832)
0.1	3.2	GO:0051119	sugar transmembrane transporter activity(GO:0051119)

Showing 1 to 2 of 2 entries

Results for AgaR

Z-value: 0.97

Transcription factors associated with AgaR

Activity-expression correlation:

Activity profile of AgaR motif

Sorted Z-values of AgaR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AgaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: