ISMARA results: YiaJ

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for YiaJ

Z-value: 0.61

Transcription factors associated with YiaJ

Gene Symbol	Gene ID	Gene Info
yiaJ RegulonDB EcoCyc	yiaJ	YiaJ DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
yiaJ		-0.62	1.0e-01	Click!

Activity profile of YiaJ motif

Sorted Z-values of YiaJ motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
yiaKLMNO-lyxK-sgbHUE Show fit	4.34		lyxK RegulonDB EcoCyc Show fit sgbH RegulonDB EcoCyc Show fit sgbE RegulonDB EcoCyc Show fit sgbU RegulonDB EcoCyc Show fit yiaK RegulonDB EcoCyc Show fit yiaM RegulonDB EcoCyc Show fit yiaL RegulonDB EcoCyc Show fit yiaO RegulonDB EcoCyc Show fit yiaN RegulonDB EcoCyc Show fit	L-xylulose kinase 3-keto-L-gulonate 6-phosphate decarboxylase L-ribulose-5-phosphate 4-epimerase predicted L-xylulose 5-phosphate 3-epimerase 2,3-diketo-L-gulonate reductase 2,3-diketo-L-gulonate:Na⁺ symporter - membrane subunit conserved protein 2,3-diketo-L-gulonate:Na⁺ symporter - periplasmic binding protein 2,3-diketo-L-gulonate:Na⁺ symporter - membrane subunit
yiaJ Show fit	0.71		yiaJ RegulonDB EcoCyc Show fit	YiaJ DNA-binding transcriptional repressor

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Network of associatons between targets according to the STRING database.

First level regulatory network of YiaJ

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.4	4.3	GO:0019324	L-lyxose metabolic process(GO:0019324)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.3	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.4	4.3	GO:0008742	L-ribulose-phosphate 4-epimerase activity(GO:0008742)

Showing 1 to 1 of 1 entries

Results for YiaJ

Z-value: 0.61

Transcription factors associated with YiaJ

Activity-expression correlation:

Activity profile of YiaJ motif

Sorted Z-values of YiaJ motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of YiaJ

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: