GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hcaR Links RegulonDB EcoCyc	hcaR	HcaR transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hcaR		0.99	6.9e-07	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
hcaR Show fit	8.17		hcaR Links RegulonDB EcoCyc Show fit	HcaR transcriptional dual regulator
hcaEFCBD Show fit	3.24		hcaD Links RegulonDB EcoCyc Show fit hcaE Links RegulonDB EcoCyc Show fit hcaF Links RegulonDB EcoCyc Show fit hcaB Links RegulonDB EcoCyc Show fit hcaC Links RegulonDB EcoCyc Show fit	3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit 3-phenylpropionate dioxygenase, α subunit 3-phenylpropionate dioxygenase, β subunit 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 3-phenylpropionate dioxygenase, predicted ferredoxin subunit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	3.2	GO:0042178	xenobiotic catabolic process(GO:0042178)
0.1	8.2	GO:0045893	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.2	GO:0051537	2 iron, 2 sulfur cluster binding(GO:0051537)
0.1	8.2	GO:0003700	transcription factor activity, sequence-specific DNA binding(GO:0003700)