GSE55662: Plasticity of transcriptional regulation under antibiotic stress
Gene Symbol | Gene ID | Gene Info |
---|---|---|
cra
|
cra | Cra DNA-binding transcriptional dual regulator |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cra | 0.69 | 6.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
gapA | 28.25 |
gapA
|
glyceraldehyde 3-phosphate dehydrogenase |
|
eno | 15.72 |
eno
|
enolase |
|
pck | 12.05 |
pck
|
phosphoenolpyruvate carboxykinase (ATP) |
|
icd | 9.65 |
icd
|
isocitrate dehydrogenase |
|
gapA-yeaD | 9.04 |
gapA
yeaD
|
glyceraldehyde 3-phosphate dehydrogenase conserved protein |
|
tpiA | 8.08 |
tpiA
|
triosephosphate isomerase |
|
epd-pgk-fbaA | 7.64 |
epd
pgk
fbaA
|
erythrose 4-phosphate dehydrogenase phosphoglycerate kinase fructose bisphosphate aldolase class II |
|
manXYZ | 7.35 |
manX
manY
manZ
|
mannose PTS permease - ManX subunit mannose PTS permease - ManY subunit mannose PTS permease - ManZ subunit |
|
ptsHI-crr | 7.29 |
ptsI
ptsH
crr
|
PTS enzyme I HPr Enzyme IIAGlc; Crr |
|
epd-pgk | 7.09 |
epd
pgk
|
erythrose 4-phosphate dehydrogenase phosphoglycerate kinase |
|
ppsA | 5.21 |
ppsA
|
phosphoenolpyruvate synthetase |
|
adhE | 3.94 |
adhE
|
aldehyde-alcohol dehydrogenase |
|
zwf | 3.21 |
zwf
|
glucose-6-phosphate dehydrogenase (NADP+) |
|
pykF | 3.21 |
pykF
|
pyruvate kinase I |
|
pfkA | 2.12 |
pfkA
|
6-phosphofructokinase I |
|
pdhR-aceEF-lpd | 1.62 |
pdhR
lpd
aceF
aceE
|
PdhR DNA-binding transcriptional dual regulator lipoamide dehydrogenase pyruvate dehydrogenase, E2 subunit subunit of E1p component of pyruvate dehydrogenase complex |
|
glk | 1.55 |
glk
|
glucosamine kinase/glucokinase |
|
aceBAK | 1.41 |
aceK
aceB
aceA
|
isocitrate dehydrogenase phosphatase / isocitrate dehydrogenase kinase malate synthase A isocitrate lyase |
|
prpBCDE | 0.94 |
prpD
prpE
prpB
prpC
|
2-methylcitrate dehydratase propionyl-CoA synthetase 2-methylisocitrate lyase 2-methylcitrate synthase |
|
acnB | 0.72 |
acnB
|
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase |
|
poxB | 0.29 |
poxB
|
pyruvate oxidase |
|
crp | 0.21 |
crp
|
CRP transcriptional dual regulator |
|
edd-eda | 0.17 |
eda
edd
|
multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase phosphogluconate dehydratase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.8 | 17.3 | GO:0019319 | gluconeogenesis(GO:0006094) hexose biosynthetic process(GO:0019319) |
4.9 | 82.7 | GO:0006096 | glycolytic process(GO:0006096) |
3.6 | 7.3 | GO:0043471 | regulation of glucose metabolic process(GO:0010906) regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) |
1.7 | 6.7 | GO:0046323 | glucose transport(GO:0015758) glucose import(GO:0046323) |
1.3 | 3.9 | GO:0006067 | ethanol metabolic process(GO:0006067) |
1.1 | 3.2 | GO:0009372 | quorum sensing(GO:0009372) |
0.8 | 1.6 | GO:0006103 | 2-oxoglutarate metabolic process(GO:0006103) |
0.6 | 1.7 | GO:0019626 | short-chain fatty acid catabolic process(GO:0019626) |
0.5 | 5.6 | GO:0022900 | electron transport chain(GO:0022900) |
0.2 | 1.4 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
0.1 | 0.2 | GO:0007584 | response to nutrient(GO:0007584) |
0.0 | 0.2 | GO:0046177 | D-gluconate metabolic process(GO:0019521) D-gluconate catabolic process(GO:0046177) |
0.0 | 0.3 | GO:0006090 | pyruvate metabolic process(GO:0006090) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.2 | 15.7 | GO:0005856 | cytoskeleton(GO:0005856) |
1.0 | 7.6 | GO:0005618 | cell wall(GO:0005618) |
0.6 | 7.3 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.4 | 2.1 | GO:0061695 | transferase complex, transferring phosphorus-containing groups(GO:0061695) |
0.2 | 82.2 | GO:0005829 | cytosol(GO:0005829) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
13.0 | 52.0 | GO:0043891 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
1.5 | 12.0 | GO:0005509 | calcium ion binding(GO:0005509) |
1.1 | 2.1 | GO:0008443 | phosphofructokinase activity(GO:0008443) |
1.0 | 7.3 | GO:0008047 | enzyme activator activity(GO:0008047) |
0.6 | 9.7 | GO:0051287 | NAD binding(GO:0051287) |
0.6 | 2.4 | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912) |
0.5 | 4.9 | GO:0015149 | hexose transmembrane transporter activity(GO:0015149) |
0.5 | 1.6 | GO:0031405 | lipoic acid binding(GO:0031405) |
0.5 | 8.1 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
0.4 | 21.2 | GO:0000287 | magnesium ion binding(GO:0000287) |
0.3 | 1.6 | GO:0019200 | carbohydrate kinase activity(GO:0019200) |
0.1 | 2.2 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
0.1 | 3.2 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor(GO:0016773) |
0.0 | 0.2 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |