GSE55662: Plasticity of transcriptional regulation under antibiotic stress
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cra | 0.69 | 6.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
gapA Show fit | 28.25 |
glyceraldehyde 3-phosphate dehydrogenase |
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eno Show fit | 15.72 |
enolase |
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pck Show fit | 12.05 |
phosphoenolpyruvate carboxykinase (ATP) |
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icd Show fit | 9.65 |
isocitrate dehydrogenase |
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gapA-yeaD Show fit | 9.04 |
glyceraldehyde 3-phosphate dehydrogenase conserved protein |
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tpiA Show fit | 8.08 |
triosephosphate isomerase |
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epd-pgk-fbaA Show fit | 7.64 |
erythrose 4-phosphate dehydrogenase phosphoglycerate kinase fructose bisphosphate aldolase class II |
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manXYZ Show fit | 7.35 |
mannose PTS permease - ManX subunit mannose PTS permease - ManY subunit mannose PTS permease - ManZ subunit |
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ptsHI-crr Show fit | 7.29 |
PTS enzyme I HPr Enzyme IIAGlc; Crr |
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epd-pgk Show fit | 7.09 |
erythrose 4-phosphate dehydrogenase phosphoglycerate kinase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.9 | 82.7 | GO:0006096 | glycolytic process(GO:0006096) |
5.8 | 17.3 | GO:0019319 | gluconeogenesis(GO:0006094) hexose biosynthetic process(GO:0019319) |
3.6 | 7.3 | GO:0043471 | regulation of glucose metabolic process(GO:0010906) regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) |
1.7 | 6.7 | GO:0046323 | glucose transport(GO:0015758) glucose import(GO:0046323) |
0.5 | 5.6 | GO:0022900 | electron transport chain(GO:0022900) |
1.3 | 3.9 | GO:0006067 | ethanol metabolic process(GO:0006067) |
1.1 | 3.2 | GO:0009372 | quorum sensing(GO:0009372) |
0.6 | 1.7 | GO:0019626 | short-chain fatty acid catabolic process(GO:0019626) |
0.8 | 1.6 | GO:0006103 | 2-oxoglutarate metabolic process(GO:0006103) |
0.2 | 1.4 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 82.2 | GO:0005829 | cytosol(GO:0005829) |
5.2 | 15.7 | GO:0005856 | cytoskeleton(GO:0005856) |
1.0 | 7.6 | GO:0005618 | cell wall(GO:0005618) |
0.6 | 7.3 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.4 | 2.1 | GO:0061695 | transferase complex, transferring phosphorus-containing groups(GO:0061695) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
13.0 | 52.0 | GO:0043891 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
0.4 | 21.2 | GO:0000287 | magnesium ion binding(GO:0000287) |
1.5 | 12.0 | GO:0005509 | calcium ion binding(GO:0005509) |
0.6 | 9.7 | GO:0051287 | NAD binding(GO:0051287) |
0.5 | 8.1 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
1.0 | 7.3 | GO:0008047 | enzyme activator activity(GO:0008047) |
0.5 | 4.9 | GO:0015149 | hexose transmembrane transporter activity(GO:0015149) |
0.1 | 3.2 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor(GO:0016773) |
0.6 | 2.4 | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912) |
0.1 | 2.2 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |