ISMARA results: Dan

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for Dan

Z-value: 0.80

Transcription factors associated with Dan

Gene Symbol	Gene ID	Gene Info
ttdR RegulonDB EcoCyc	ttdR	Dan transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ttdR		0.58	1.3e-01	Click!

Activity profile of Dan motif

Sorted Z-values of Dan motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
ttdABT Show fit	6.54		ttdA RegulonDB EcoCyc Show fit ttdB RegulonDB EcoCyc Show fit ttdT RegulonDB EcoCyc Show fit	L-tartrate dehydratase, α subunit L-tartrate dehydratase, β subunit tartrate:succinate antiporter
ttdR Show fit	2.37		ttdR RegulonDB EcoCyc Show fit	Dan transcriptional activator

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Network of associatons between targets according to the STRING database.

First level regulatory network of Dan

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	6.5	GO:0042710	biofilm formation(GO:0042710)
0.0	2.4	GO:1902680	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	6.5	GO:0005886	plasma membrane(GO:0005886)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	6.5	GO:0015297	antiporter activity(GO:0015297)
0.0	2.4	GO:0043565	sequence-specific DNA binding(GO:0043565)

Showing 1 to 2 of 2 entries

Results for Dan

Z-value: 0.80

Transcription factors associated with Dan

Activity-expression correlation:

Activity profile of Dan motif

Sorted Z-values of Dan motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Dan

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: