GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
lsrR Links RegulonDB EcoCyc	lsrR	LsrR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
lsrR		0.96	1.1e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
lsrACDBFG-tam Show fit	5.99		lsrA Links RegulonDB EcoCyc Show fit lsrC Links RegulonDB EcoCyc Show fit lsrB Links RegulonDB EcoCyc Show fit lsrD Links RegulonDB EcoCyc Show fit lsrG Links RegulonDB EcoCyc Show fit lsrF Links RegulonDB EcoCyc Show fit tam Links RegulonDB EcoCyc Show fit	AI-2 ABC transporter - ATP binding subunit Autoinducer-2 ABC transporter - membrane subunit autoinducer-2 ABC transporter - periplasmic binding protein Autoinducer-2 ABC transporter - membrane subunit phospho-AI-2 isomerase 3-hydroxy-2,4-pentadione 5-phosphate thiolase trans-aconitate 2-methyltransferase
lsrRK Show fit	4.01		lsrK Links RegulonDB EcoCyc Show fit lsrR Links RegulonDB EcoCyc Show fit	autoinducer-2 kinase LsrR DNA-binding transcriptional repressor

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.3	4.0	GO:0009372	quorum sensing(GO:0009372)
0.1	6.0	GO:0055114	oxidation-reduction process(GO:0055114)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	6.0	GO:0016021	integral component of membrane(GO:0016021)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	6.0	GO:0015145	monosaccharide transmembrane transporter activity(GO:0015145)
0.2	4.0	GO:0000987	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)