ISMARA results: FeaR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for FeaR

Z-value: 0.65

Transcription factors associated with FeaR

Gene Symbol	Gene ID	Gene Info
feaR RegulonDB EcoCyc	feaR	FeaR DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
feaR		0.84	8.9e-03	Click!

Activity profile of FeaR motif

Sorted Z-values of FeaR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
tynA Show fit	2.91		tynA RegulonDB EcoCyc Show fit	copper-containing amine oxidase
feaB Show fit	2.79		feaB RegulonDB EcoCyc Show fit	phenylacetaldehyde dehydrogenase

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Network of associatons between targets according to the STRING database.

First level regulatory network of FeaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.9	GO:0009310	amine catabolic process(GO:0009310) cellular biogenic amine catabolic process(GO:0042402)
0.7	2.8	GO:0018958	phenol-containing compound metabolic process(GO:0018958)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.9	GO:0042597	periplasmic space(GO:0042597)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.9	GO:0048038	quinone binding(GO:0048038)
0.5	2.8	GO:0004029	aldehyde dehydrogenase (NAD) activity(GO:0004029)

Showing 1 to 2 of 2 entries

Results for FeaR

Z-value: 0.65

Transcription factors associated with FeaR

Activity-expression correlation:

Activity profile of FeaR motif

Sorted Z-values of FeaR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of FeaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: