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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for NarP
Z-value: 1.46
Transcription factors associated with NarP
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| narP | -0.50 | 2.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| yeaR-yoaG Show fit | 12.81 |
predicted protein conserved protein |
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| nirBDC-cysG Show fit | 7.35 |
nitrite reductase, small subunit siroheme synthase subunit nitrite transporter NirC nitrite reductase, large subunit |
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| ydhYVWXUT Show fit | 6.73 |
predicted 4Fe-4S ferredoxin-type protein predicted 4Fe-4S ferredoxin-type protein predicted protein predicted oxidoreductase predicted cytochrome conserved protein |
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| hyaABCDEF Show fit | 4.78 |
hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA |
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| ytfE Show fit | 4.46 |
iron-sulfur cluster repair protein YtfE |
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| ydeP Show fit | 4.17 |
acid resistance protein |
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| norVW Show fit | 3.03 |
NADH:flavorubredoxin reductase flavorubredoxin |
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| nrfABCDEFG Show fit | 1.03 |
activator of formate-dependent nitrite reductase complex NrfG formate dependent nitrite reductase - NrfD subunit formate-dependent nitrite reductase; possible assembly function formate-dependent nitrite reductase - penta-heme cytochrome c formate-dependent nitrite reductase, 4Fe-4S subunit formate dependent nitrite reductase - NrfA subunit |
Network of associatons between targets according to the STRING database.
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 7.4 | GO:0015707 | nitrite transport(GO:0015707) |
| 1.0 | 4.8 | GO:0016485 | protein processing(GO:0016485) |
| 1.1 | 4.5 | GO:0030091 | protein repair(GO:0030091) |
| 0.5 | 4.2 | GO:0010447 | response to acidic pH(GO:0010447) |
| 1.0 | 3.0 | GO:1902170 | cellular response to nitrogen compound(GO:1901699) cellular response to reactive nitrogen species(GO:1902170) |
| 0.3 | 1.0 | GO:0019645 | anaerobic electron transport chain(GO:0019645) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.7 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
| 0.1 | 7.4 | GO:0043234 | protein complex(GO:0043234) |
| 0.7 | 3.7 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.5 | GO:0005506 | iron ion binding(GO:0005506) |
| 2.5 | 7.4 | GO:0004325 | ferrochelatase activity(GO:0004325) nitrite transmembrane transporter activity(GO:0015113) |
| 1.2 | 3.7 | GO:0005048 | signal sequence binding(GO:0005048) |
| 0.3 | 1.0 | GO:0016662 | oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) |