ISMARA results: CspA

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for CspA

Z-value: 0.77

Transcription factors associated with CspA

Gene Symbol	Gene ID	Gene Info
cspA RegulonDB EcoCyc	cspA	CspA DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cspA		0.95	2.3e-04	Click!

Activity profile of CspA motif

Sorted Z-values of CspA motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
gyrA Show fit	6.66		gyrA RegulonDB EcoCyc Show fit	DNA gyrase, subunit A
hns Show fit	1.51		hns RegulonDB EcoCyc Show fit	H-NS DNA-binding transcriptional dual regulator

Showing 1 to 2 of 2 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of CspA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.2	6.7	GO:0006265	DNA topological change(GO:0006265)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	8.2	GO:0016020	membrane(GO:0016020)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.2	6.7	GO:0003916	DNA topoisomerase activity(GO:0003916)
0.2	1.5	GO:0003681	bent DNA binding(GO:0003681)

Showing 1 to 2 of 2 entries

Results for CspA

Z-value: 0.77

Transcription factors associated with CspA

Activity-expression correlation:

Activity profile of CspA motif

Sorted Z-values of CspA motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of CspA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: