GSE55662: Plasticity of transcriptional regulation under antibiotic stress
Gene Symbol | Gene ID | Gene Info |
---|---|---|
phoB
|
phoB | PhoB transcriptional dual regulator |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
phoB | 0.57 | 1.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
pitB | 9.66 |
pitB
|
metal phosphate:H+ symporter PitB |
|
ugpBAECQ | 8.19 |
ugpE
ugpA
ugpB
ugpC
ugpQ
|
glycerol-3-phosphate ABC transporter - membrane subunit glycerol-3-phosphate ABC transporter - membrane subunit glycerol-3-phosphate ABC transporter - periplasmic binding protein glycerol-3-phosphate ABC transporter - ATP binding subunit glycerophosphodiester phosphodiesterase, cytosolic |
|
cusCFBA | 6.81 |
cusA
cusC
cusB
cusF
|
copper / silver exporter - membrane subunit copper / silver exporter - outer membrane porin copper / silver exporter - membrane fusion protein copper / silver exporter - periplasmic binding protein and metallochaperone |
|
gadX | 5.65 |
gadX
|
GadX DNA-binding transcriptional dual regulator |
|
psiE | 4.96 |
psiE
|
predicted phosphate starvation-inducible protein |
|
waaH | 4.96 |
waaH
|
UDP-glucuronate:LPS(HepIII) glycosyltransferase |
|
gadXW | 4.82 |
gadW
gadX
|
GadW DNA-binding transcriptional dual regulator GadX DNA-binding transcriptional dual regulator |
|
prpR | 4.78 |
prpR
|
PrpR DNA-binding transcriptional dual regulator |
|
phoBR | 3.93 |
phoR
phoB
|
PhoR PhoB transcriptional dual regulator |
|
feaR | 3.81 |
feaR
|
FeaR DNA-binding transcriptional activator |
|
phoQ | 3.26 |
phoQ
|
PhoQ sensory histidine kinase |
|
yhjC | 2.96 |
yhjC
|
predicted DNA-binding transcriptional regulator |
|
phoE | 2.88 |
phoE
|
outer membrane porin E |
|
phnCDE_1E_2FGHIJKLMNOP | 2.85 |
phnP
phnL
phnF
phnG
phnD
phnC
phnO
phnN
phnE_1
phnE_2
phnM
phnJ
phnK
phnH
phnI
|
5-phospho-α-D-ribosyl 1,2-cyclic phosphate phosphodiesterase PhnL subunit of methylphosphonate degradation complex PhnF predicted transcriptional regulator carbon-phosphorus lyase core complex, PhnG subunit phosphonate ABC transporter - periplasmic binding protein phosphonate ABC transporter - ATP binding subunit aminoalkylphosphonate N-acetyltransferase ribose 1,5-bisphosphokinase phosphonate ABC transporter - membrane subunit phosphonate/organophosphate ester transporter (pseudogene) RPnTP hydrolase carbon-phosphorus lyase core complex, PhnJ subunit predicted carbon-phosphorus lyase subunit carbon-phosphorus lyase core complex, PhnH subunit carbon-phosphorus lyase core complex, PhnI subunit |
|
pstSCA | 2.73 |
pstS
pstC
pstA
|
phosphate ABC transporter - periplasmic binding protein phosphate ABC transporter - membrane subunit phosphate ABC transporter - membrane subunit |
|
asr | 2.48 |
asr
|
acid shock protein |
|
pstSCAB-phoU | 1.92 |
pstS
pstC
pstA
phoU
pstB
|
phosphate ABC transporter - periplasmic binding protein phosphate ABC transporter - membrane subunit phosphate ABC transporter - membrane subunit negative regulator of the pho regulon phosphate ABC transporter - ATP binding subunit |
|
phoA-psiF | 1.82 |
phoA
psiF
|
alkaline phosphatase conserved protein |
|
yegH | 1.36 |
yegH
|
inner membrane protein YegH |
|
pstS | 1.30 |
pstS
|
phosphate ABC transporter - periplasmic binding protein |
|
phoH | 1.10 |
phoH
|
ATP-binding protein |
|
adiC | 1.01 |
adiC
|
AdiC arginine:agmatine antiporter |
|
cusRS | 0.62 |
cusS
cusR
|
CusS sensory histidine kinase CusR transcriptional activator |
|
phoU | 0.57 |
phoU
|
negative regulator of the pho regulon |
|
argP | 0.23 |
argP
|
ArgP transcriptional activator |
|
cra | 0.23 |
cra
|
Cra DNA-binding transcriptional dual regulator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 7.4 | GO:0010272 | response to silver ion(GO:0010272) |
2.1 | 14.9 | GO:0035435 | phosphate ion transmembrane transport(GO:0035435) inorganic anion transmembrane transport(GO:0098661) |
2.0 | 8.2 | GO:0015748 | organophosphate ester transport(GO:0015748) |
1.8 | 8.9 | GO:0016036 | cellular response to phosphate starvation(GO:0016036) |
1.3 | 1.3 | GO:0010921 | regulation of phosphatase activity(GO:0010921) |
1.1 | 3.3 | GO:0010350 | cellular response to magnesium starvation(GO:0010350) |
1.0 | 2.9 | GO:0046391 | 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391) |
0.5 | 2.5 | GO:0010043 | response to zinc ion(GO:0010043) |
0.3 | 1.0 | GO:0055067 | regulation of pH(GO:0006885) cellular monovalent inorganic cation homeostasis(GO:0030004) regulation of cellular pH(GO:0030641) pH elevation(GO:0045852) regulation of intracellular pH(GO:0051453) intracellular pH elevation(GO:0051454) monovalent inorganic cation homeostasis(GO:0055067) |
0.3 | 19.3 | GO:1903508 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
0.1 | 1.8 | GO:0016311 | dephosphorylation(GO:0016311) |
0.0 | 0.2 | GO:0006096 | glycolytic process(GO:0006096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 8.2 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
0.4 | 2.9 | GO:0061695 | transferase complex, transferring phosphorus-containing groups(GO:0061695) |
0.2 | 6.0 | GO:1904949 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.1 | 11.1 | GO:0042597 | periplasmic space(GO:0042597) |
0.1 | 25.4 | GO:0005886 | plasma membrane(GO:0005886) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.8 | 22.5 | GO:1901677 | phosphate transmembrane transporter activity(GO:1901677) |
1.7 | 6.8 | GO:0016530 | metallochaperone activity(GO:0016530) |
1.3 | 3.9 | GO:0001098 | basal transcription machinery binding(GO:0001098) bacterial-type RNA polymerase holo enzyme binding(GO:0001108) |
1.2 | 10.5 | GO:0001140 | transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140) |
0.6 | 5.0 | GO:0008194 | UDP-glycosyltransferase activity(GO:0008194) |
0.5 | 2.9 | GO:0008080 | N-acetyltransferase activity(GO:0008080) phosphotransferase activity, phosphate group as acceptor(GO:0016776) |
0.4 | 1.3 | GO:0042301 | phosphate ion binding(GO:0042301) |
0.3 | 0.6 | GO:0009927 | histidine phosphotransfer kinase activity(GO:0009927) |
0.3 | 3.8 | GO:0001159 | bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.3 | 1.0 | GO:0015181 | arginine transmembrane transporter activity(GO:0015181) |
0.3 | 3.3 | GO:0004721 | phosphorelay sensor kinase activity(GO:0000155) protein histidine kinase activity(GO:0004673) phosphoprotein phosphatase activity(GO:0004721) |
0.1 | 8.0 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |
0.1 | 1.8 | GO:0016791 | phosphatase activity(GO:0016791) |
0.0 | 0.6 | GO:0030145 | manganese ion binding(GO:0030145) |
0.0 | 1.1 | GO:0005524 | ATP binding(GO:0005524) |