ISMARA results: HdfR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for HdfR

Z-value: 0.57

Transcription factors associated with HdfR

Gene Symbol	Gene ID	Gene Info
hdfR RegulonDB EcoCyc	hdfR	HdfR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hdfR		-0.26	5.3e-01	Click!

Activity profile of HdfR motif

Sorted Z-values of HdfR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
flhDC Show fit	3.59		flhC RegulonDB EcoCyc Show fit flhD RegulonDB EcoCyc Show fit	FlhC transcriptional dual regulator FlhD transcriptional dual regulator
gltBDF Show fit	1.48		gltB RegulonDB EcoCyc Show fit gltD RegulonDB EcoCyc Show fit gltF RegulonDB EcoCyc Show fit	glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein

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Network of associatons between targets according to the STRING database.

First level regulatory network of HdfR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.6	GO:0097659	transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)
0.5	1.5	GO:0019676	ammonia assimilation cycle(GO:0019676)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.5	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.5	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638)

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Results for HdfR

Z-value: 0.57

Transcription factors associated with HdfR

Activity-expression correlation:

Activity profile of HdfR motif

Sorted Z-values of HdfR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of HdfR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: