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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for CdaR
Z-value: 2.02
Transcription factors associated with CdaR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
cdaR
|
cdaR | CdaR DNA-binding transcriptional activator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| cdaR | 0.96 | 1.4e-04 | Click! |
Activity profile of CdaR motif
Sorted Z-values of CdaR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| garD | 16.30 |
garD
|
galactarate dehydratase |
|
| gudPXD | 13.86 |
gudP
gudX
gudD
|
galactarate / glucarate / glycerate transporter GudP glucarate dehydratase-related protein D-glucarate dehydratase |
|
| garPLRK-rnpB | 10.65 |
garL
rnpB
garR
garK
garP
|
α-dehydro-β-deoxy-D-glucarate aldolase RnpB tartronate semialdehyde reductase glycerate kinase I galactarate / glucarate / glycerate transporter GarP |
|
| cdaR | 7.52 |
cdaR
|
CdaR DNA-binding transcriptional activator |
Network of associatons between targets according to the STRING database.
First level regulatory network of CdaR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 13.6 | 40.8 | GO:0019577 | aldaric acid metabolic process(GO:0019577) aldaric acid catabolic process(GO:0019579) |
| 0.1 | 7.5 | GO:0045893 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 24.5 | GO:0016021 | integral component of membrane(GO:0016021) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.7 | 10.6 | GO:0016662 | oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) |
| 0.8 | 30.2 | GO:0016836 | hydro-lyase activity(GO:0016836) |
| 0.1 | 7.5 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |