ISMARA results: CdaR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for CdaR

Z-value: 2.02

Transcription factors associated with CdaR

Gene Symbol	Gene ID	Gene Info
cdaR RegulonDB EcoCyc	cdaR	CdaR DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cdaR		0.96	1.4e-04	Click!

Activity profile of CdaR motif

Sorted Z-values of CdaR motif

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Promoter	Log-likelihood	Gene	Gene Info
garD Show fit	16.30	garD RegulonDB EcoCyc Show fit	galactarate dehydratase
gudPXD Show fit	13.86	gudP RegulonDB EcoCyc Show fit gudX RegulonDB EcoCyc Show fit gudD RegulonDB EcoCyc Show fit	galactarate / glucarate / glycerate transporter GudP glucarate dehydratase-related protein D-glucarate dehydratase
garPLRK-rnpB Show fit	10.65	garL RegulonDB EcoCyc Show fit rnpB RegulonDB EcoCyc Show fit garR RegulonDB EcoCyc Show fit garK RegulonDB EcoCyc Show fit garP RegulonDB EcoCyc Show fit	α-dehydro-β-deoxy-D-glucarate aldolase RnpB tartronate semialdehyde reductase glycerate kinase I galactarate / glucarate / glycerate transporter GarP
cdaR Show fit	7.52	cdaR RegulonDB EcoCyc Show fit	CdaR DNA-binding transcriptional activator

Showing 1 to 4 of 4 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of CdaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
13.6	40.8	GO:0019577	aldaric acid metabolic process(GO:0019577) aldaric acid catabolic process(GO:0019579)
0.1	7.5	GO:0045893	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	24.5	GO:0016021	integral component of membrane(GO:0016021)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.8	30.2	GO:0016836	hydro-lyase activity(GO:0016836)
2.7	10.6	GO:0016662	oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662)
0.1	7.5	GO:0003700	transcription factor activity, sequence-specific DNA binding(GO:0003700)

Showing 1 to 3 of 3 entries

Results for CdaR

Z-value: 2.02

Transcription factors associated with CdaR

Activity-expression correlation:

Activity profile of CdaR motif

Sorted Z-values of CdaR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of CdaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: