ISMARA results: IdnR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for IdnR

Z-value: 1.18

Transcription factors associated with IdnR

Gene Symbol	Gene ID	Gene Info
idnR RegulonDB EcoCyc	idnR	IdnR transcriptional regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
idnR		0.88	4.1e-03	Click!

Activity profile of IdnR motif

Sorted Z-values of IdnR motif

Top targets:

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Promoter	Log-likelihood	Gene	Gene Info
idnK Show fit	7.19	idnK RegulonDB EcoCyc Show fit	D-gluconate kinase, thermosensitive
gntKU Show fit	4.40	gntK RegulonDB EcoCyc Show fit gntU RegulonDB EcoCyc Show fit	D-gluconate kinase, thermostable gluconate transporter GntU
gntK Show fit	3.72	gntK RegulonDB EcoCyc Show fit	D-gluconate kinase, thermostable
idnDOTR Show fit	3.43	idnD RegulonDB EcoCyc Show fit idnO RegulonDB EcoCyc Show fit idnR RegulonDB EcoCyc Show fit idnT RegulonDB EcoCyc Show fit	L-idonate 5-dehydrogenase 5-keto-D-gluconate 5-reductase IdnR transcriptional regulator L-idonate / 5-ketogluconate / gluconate transporter IdnT

Showing 1 to 4 of 4 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of IdnR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
3.1	15.3	GO:0046177	D-gluconate metabolic process(GO:0019521) D-gluconate catabolic process(GO:0046177)
1.7	3.4	GO:0042873	aldonate transport(GO:0042873)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	7.8	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
5.1	15.3	GO:0046316	gluconokinase activity(GO:0046316)
0.9	3.4	GO:0015128	gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879)

Showing 1 to 2 of 2 entries

Results for IdnR

Z-value: 1.18

Transcription factors associated with IdnR

Activity-expression correlation:

Activity profile of IdnR motif

Sorted Z-values of IdnR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of IdnR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: