ISMARA results: Ada

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for Ada

Z-value: 0.63

Transcription factors associated with Ada

Gene Symbol	Gene ID	Gene Info
ada RegulonDB EcoCyc	ada	Ada DNA-binding transcriptional dual regulator / DNA repair protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ada		-0.68	6.2e-02	Click!

Activity profile of Ada motif

Sorted Z-values of Ada motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
aidB Show fit	3.83		aidB RegulonDB EcoCyc Show fit	isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor
alkA Show fit	1.95		alkA RegulonDB EcoCyc Show fit	3-methyl-adenine DNA glycosylase II, inducible

Showing 1 to 2 of 2 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Ada

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.3	GO:1903507	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
0.5	2.0	GO:0006284	base-excision repair(GO:0006284)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	2.0	GO:0032993	protein-DNA complex(GO:0032993)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.8	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors(GO:0016627)
0.7	2.0	GO:0019104	DNA N-glycosylase activity(GO:0019104)

Showing 1 to 2 of 2 entries

Results for Ada

Z-value: 0.63

Transcription factors associated with Ada

Activity-expression correlation:

Activity profile of Ada motif

Sorted Z-values of Ada motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Ada

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: