ISMARA results: Sigma19

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for Sigma19

Z-value: 0.43

Transcription factors associated with Sigma19

Gene Symbol	Gene ID	Gene Info
fecI RegulonDB EcoCyc	fecI	RNA polymerase sigma factor FecI

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
fecI		0.95	3.5e-04	Click!

Activity profile of Sigma19 motif

Sorted Z-values of Sigma19 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
fecABCDE Show fit	2.70		fecD RegulonDB EcoCyc Show fit fecE RegulonDB EcoCyc Show fit fecB RegulonDB EcoCyc Show fit fecC RegulonDB EcoCyc Show fit fecA RegulonDB EcoCyc Show fit	ferric citrate ABC transporter - membrane subunit ferric citrate ABC transporter - ATP binding subunit ferric citrate ABC transporter - periplasmic binding protein ferric citrate ABC transporter - membrane subunit ferric citrate outer membrane porin FecA

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Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma19

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.7	GO:0015682	ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	2.7	GO:0055052	ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.7	GO:0015603	iron chelate transmembrane transporter activity(GO:0015603)

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Results for Sigma19

Z-value: 0.43

Transcription factors associated with Sigma19

Activity-expression correlation:

Activity profile of Sigma19 motif

Sorted Z-values of Sigma19 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma19

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: