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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for Sigma19

Z-value: 0.43

Transcription factors associated with Sigma19

Gene Symbol Gene ID Gene Info
fecI RNA polymerase sigma factor FecI

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
fecI0.953.5e-04Click!

Activity profile of Sigma19 motif

Sorted Z-values of Sigma19 motif

Promoter Log-likelihood Transcript Gene Gene Info
fecABCDE 2.70 ferric citrate ABC transporter - membrane subunit
ferric citrate ABC transporter - ATP binding subunit
ferric citrate ABC transporter - periplasmic binding protein
ferric citrate ABC transporter - membrane subunit
ferric citrate outer membrane porin FecA

Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma19

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.7 GO:0015682 ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.7 GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.7 GO:0015603 iron chelate transmembrane transporter activity(GO:0015603)