ISMARA results: GadW

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for GadW

Gene Symbol	Gene ID	Gene Info
gadW RegulonDB EcoCyc	gadW	GadW DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
gadW		0.55	1.6e-01	Click!
gadX		0.55	1.6e-01	Click!

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Promoter	Log-likelihood	Gene	Gene Info
gadX Show fit	2.63	gadX RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator
gadAX Show fit	2.50	gadX RegulonDB EcoCyc Show fit gadA RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator glutamate decarboxylase A subunit
gadXW Show fit	2.14	gadW RegulonDB EcoCyc Show fit gadX RegulonDB EcoCyc Show fit	GadW DNA-binding transcriptional dual regulator GadX DNA-binding transcriptional dual regulator
gadBC Show fit	1.71	gadB RegulonDB EcoCyc Show fit gadC RegulonDB EcoCyc Show fit	glutamate decarboxylase B subunit glutamic acid:4-aminobutyrate antiporter
gadW Show fit	1.50	gadW RegulonDB EcoCyc Show fit	GadW DNA-binding transcriptional dual regulator
slp-dctR Show fit	0.53	slp RegulonDB EcoCyc Show fit dctR RegulonDB EcoCyc Show fit	starvation lipoprotein predicted DNA-binding transcriptional regulator

Showing 1 to 6 of 6 entries

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	4.8	GO:0045893	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)
1.1	4.2	GO:0051454	pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.2	0.5	GO:0031329	regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471)

Showing 1 to 3 of 3 entries

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Log-likelihood per target	Total log-likelihood	Term	Description
0.8	7.3	GO:0001140	transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140)
0.1	1.7	GO:0015297	antiporter activity(GO:0015297)
0.0	1.5	GO:0003700	transcription factor activity, sequence-specific DNA binding(GO:0003700)

Showing 1 to 3 of 3 entries