ISMARA results: GutM

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for GutM

Z-value: 0.48

Transcription factors associated with GutM

Gene Symbol	Gene ID	Gene Info
gutM RegulonDB EcoCyc	gutM	GutM DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
gutM		0.98	1.9e-05	Click!

Activity profile of GutM motif

Sorted Z-values of GutM motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
srlAEBD-gutM-srlR-gutQ Show fit	3.24		srlB RegulonDB EcoCyc Show fit srlA RegulonDB EcoCyc Show fit srlE RegulonDB EcoCyc Show fit srlD RegulonDB EcoCyc Show fit gutQ RegulonDB EcoCyc Show fit srlR RegulonDB EcoCyc Show fit gutM RegulonDB EcoCyc Show fit	sorbitol PTS permease - SrlB subunit sorbitol PTS permease - SrlA subunit sorbitol PTS permease - SrlE subunit sorbitol-6-phosphate dehydrogenase D-arabinose 5-phosphate isomerase GutR DNA-binding transcriptional repressor GutM DNA-binding transcriptional activator

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Network of associatons between targets according to the STRING database.

First level regulatory network of GutM

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.1	3.2	GO:0006059	hexitol metabolic process(GO:0006059) hexitol catabolic process(GO:0019407)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.2	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.1	3.2	GO:0019146	arabinose-5-phosphate isomerase activity(GO:0019146)

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Results for GutM

Z-value: 0.48

Transcription factors associated with GutM

Activity-expression correlation:

Activity profile of GutM motif

Sorted Z-values of GutM motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of GutM

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: