GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nrdR Links RegulonDB EcoCyc	nrdR	NrdR transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nrdR		0.76	2.8e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nrdAB-yfaE Show fit	4.21		nrdA Links RegulonDB EcoCyc Show fit nrdB Links RegulonDB EcoCyc Show fit yfaE Links RegulonDB EcoCyc Show fit	ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance
nrdDG Show fit	4.09		nrdD Links RegulonDB EcoCyc Show fit nrdG Links RegulonDB EcoCyc Show fit	anaerobic ribonucleoside-triphosphate reductase anaerobic ribonucleoside-triphosphate reductase-activating protein

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.2	6.9	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.8	GO:1990204	oxidoreductase complex(GO:1990204)
0.0	4.1	GO:0043234	protein complex(GO:0043234)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.3	6.9	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)