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GSE67402: E.coli regulatory changes under long-term starvation
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ISMARA results GSE67402: E.coli regulatory changes under long-term starvation
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
All motifs sorted by activity significance
| Motif name | Z-value | Associated genes | Profile | Logo |
|---|---|---|---|---|
| Sigma70 | 3.87 |
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| H-NS | 3.76 |
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| NtrC | 3.21 |
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| PurR | 3.14 |
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| Sigma38 | 3.03 |
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| Cra | 2.87 |
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| GlpR | 2.87 |
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| Fis | 2.81 |
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| Sigma54 | 2.64 |
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| Fur | 2.50 |
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| MalT | 2.43 |
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| Sigma24 | 2.39 |
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| NanR | 2.22 |
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| CysB | 2.07 |
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| LexA | 2.06 |
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| AraC | 1.99 |
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| MetJ | 1.67 |
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| AllR | 1.58 |
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| Sigma28 | 1.57 |
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| NsrR | 1.50 |
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| CRP | 1.49 |
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| PhoB | 1.45 |
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| HypT | 1.43 |
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| GadE | 1.42 |
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| YdeO | 1.40 |
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| RcsB-BglJ | 1.39 |
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| ArgP | 1.36 |
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| FadR | 1.34 |
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| NarP | 1.34 |
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| TrpR | 1.33 |
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| PuuR | 1.32 |
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| Sigma32 | 1.29 |
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| CueR | 1.28 |
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| Zur | 1.26 |
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| ArcA | 1.26 |
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| MlrA | 1.24 |
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| TorR | 1.21 |
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| ComR | 1.19 |
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| FlhDC | 1.17 |
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| DcuR | 1.16 |
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| UxuR | 1.16 |
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| StpA | 1.15 |
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| PdhR | 1.12 |
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| EvgA | 1.12 |
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| SoxS | 1.12 |
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| FNR | 1.08 |
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| HdfR | 1.07 |
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| IHF | 1.00 |
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| OmpR | 1.00 |
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| ArgR | 0.97 |
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| CynR | 0.96 |
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| MntR | 0.96 |
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| PspF | 0.94 |
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| MqsA | 0.93 |
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| RhaS | 0.93 |
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| AsnC | 0.93 |
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| CpxR | 0.93 |
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| YjjQ | 0.93 |
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| AgaR | 0.89 |
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| DinJ-YafQ | 0.89 |
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| OxyR | 0.88 |
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| ExuR | 0.87 |
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| GlcC | 0.87 |
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| CspA | 0.86 |
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| IlvY | 0.86 |
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| DsdC | 0.84 |
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| IdnR | 0.83 |
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| CytR | 0.82 |
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| NagC | 0.82 |
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| PaaX | 0.81 |
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| RcsB | 0.81 |
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| DicA | 0.81 |
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| SoxR | 0.81 |
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| RcsAB | 0.79 |
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| CdaR | 0.79 |
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| RstA | 0.77 |
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| TyrR | 0.77 |
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| CaiF | 0.77 |
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| McbR | 0.76 |
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| LsrR | 0.75 |
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| MprA | 0.75 |
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| Nac | 0.74 |
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| Dan | 0.74 |
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| CusR | 0.73 |
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| YedW | 0.73 |
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| RcdA | 0.73 |
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| FeaR | 0.73 |
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| GadX | 0.72 |
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| ModE | 0.72 |
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| PhoP | 0.71 |
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| BasR | 0.71 |
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| NarL | 0.68 |
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| EnvY | 0.67 |
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| NimR | 0.66 |
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| Mlc | 0.66 |
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| CadC | 0.65 |
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| CsgD | 0.64 |
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| RutR | 0.63 |
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| GadE-RcsB | 0.62 |
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| PrpR | 0.62 |
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| GlrR | 0.61 |
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| AlaS | 0.61 |
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| IclR | 0.60 |
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| UvrY | 0.59 |
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| MarA | 0.59 |
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| Rob | 0.59 |
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| MngR | 0.58 |
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| Lrp | 0.58 |
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| BolA | 0.57 |
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| DnaA | 0.57 |
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| GatR | 0.56 |
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| AccB | 0.55 |
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| PepA | 0.55 |
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| AlsR | 0.54 |
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| XylR | 0.54 |
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| Sigma19 | 0.53 |
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| YqhC | 0.53 |
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| IscR | 0.52 |
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| MazE | 0.52 |
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| MazE-MazF | 0.52 |
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| RbsR | 0.51 |
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| GntR | 0.51 |
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| RclR | 0.51 |
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| MetR | 0.51 |
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| XapR | 0.50 |
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| YehT | 0.50 |
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| YpdB | 0.49 |
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| FucR | 0.49 |
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| AdiY | 0.49 |
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| KdpE | 0.49 |
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| NadR | 0.48 |
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| HU | 0.48 |
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| Ada | 0.48 |
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| MelR | 0.48 |
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| DhaR | 0.48 |
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| GcvA | 0.48 |
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| ZraR | 0.47 |
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| LeuO | 0.47 |
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| AidB | 0.47 |
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| UhpA | 0.47 |
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| ZntR | 0.46 |
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| MurR | 0.46 |
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| BaeR | 0.46 |
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| KdgR | 0.45 |
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| AcrR | 0.45 |
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| SgrR | 0.45 |
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| EbgR | 0.45 |
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| MtlR | 0.44 |
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| BluR | 0.43 |
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| DpiA | 0.43 |
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| HcaR | 0.43 |
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| UlaR | 0.43 |
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| RelB | 0.42 |
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| QseB | 0.42 |
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| MatA | 0.41 |
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| SdiA | 0.41 |
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| NrdR | 0.40 |
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| FhlA | 0.39 |
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| YiaJ | 0.39 |
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| NorR | 0.38 |
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| CreB | 0.38 |
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| PgrR | 0.38 |
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| FabR | 0.37 |
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| BetI | 0.37 |
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| TreR | 0.37 |
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| UidR | 0.37 |
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| LrhA | 0.36 |
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| MhpR | 0.36 |
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| LysR | 0.36 |
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| AppY | 0.35 |
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| YeiL | 0.35 |
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| HipB | 0.35 |
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| FliZ | 0.35 |
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| BirA | 0.34 |
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| PutA | 0.34 |
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| LacI | 0.34 |
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| NhaR | 0.34 |
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| ArsR | 0.33 |
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| TdcA | 0.32 |
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| GadW | 0.32 |
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| CecR | 0.32 |
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| LldR | 0.32 |
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| MarR | 0.31 |
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| AllS | 0.30 |
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| DeoR | 0.30 |
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| MraZ | 0.29 |
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| MalI | 0.28 |
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| AscG | 0.28 |
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| YqjI | 0.28 |
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| CsiR | 0.27 |
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| EnvR | 0.27 |
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| RtcR | 0.26 |
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| GutM | 0.25 |
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| HyfR | 0.23 |
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| SlyA | 0.23 |
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| GalS | 0.23 |
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| GalR | 0.23 |
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| Cbl | 0.23 |
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| AtoC | 0.22 |
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| SutR | 0.22 |
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| RhaR | 0.21 |
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| NemR | 0.21 |
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| HipAB | 0.20 |
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| ChbR | 0.18 |
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| NikR | 0.10 |
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