GSE67402: E.coli regulatory changes under long-term starvation
Gene Symbol | Gene ID | Gene Info |
---|---|---|
rpoD
|
rpoD | RNA polymerase sigma factor RpoD |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rpoD | 0.94 | 6.8e-13 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
ilvIH | 47.73 |
ilvI
ilvH
|
acetolactate synthase / acetohydroxybutanoate synthase, catalytic subunit acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit |
|
tufA | 44.87 |
tufA
|
elongation factor Tu |
|
topA | 44.16 |
topA
|
DNA topoisomerase I |
|
cspA | 41.49 |
cspA
|
CspA DNA-binding transcriptional activator |
|
hupB | 38.79 |
hupB
|
transcriptional dual regulator HU-β, NS1 (HU-1) |
|
rpsA-ihfB | 35.73 |
ihfB
rpsA
|
integration host factor (IHF), β subunit 30S ribosomal subunit protein S1 |
|
ahpCF | 32.77 |
ahpF
ahpC
|
alkyl hydroperoxide reductase, AhpF component alkyl hydroperoxide reductase, AhpC component |
|
pgk-fbaA | 31.54 |
pgk
fbaA
|
phosphoglycerate kinase fructose bisphosphate aldolase class II |
|
gltX | 29.61 |
gltX
|
glutamate-tRNA ligase |
|
serA | 28.84 |
|
|
|
rne | 28.83 |
rne
|
RNase E |
|
yjeF-tsaE-amiB-mutL-miaA-hfq-hflXKC | 28.70 |
miaA
tsaE
hfq
hflK
mutL
amiB
yjeF
hflX
hflC
|
tRNA(i6A37) synthase N6-L-threonylcarbamoyladenine synthase, TsaE subunit RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins regulator of FtsH protease MutL N-acetylmuramoyl-L-alanine amidase B NAD(P)HX epimerase / NAD(P)HX dehydratase ribosome-dissociating factor, GTPase regulator of FtsH protease |
|
flgBCDEFGHIJ | 28.07 |
flgC
flgB
flgG
flgF
flgE
flgD
flgJ
flgI
flgH
|
flagellar basal-body rod protein FlgC flagellar basal-body rod protein FlgB flagellar basal-body rod protein FlgG flagellar basal-body rod protein FlgF flagellar hook protein FlgE flagellar biosynthesis, initiation of hook assembly FlgJ flagellar P-ring protein FlgI flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
|
rpsF-priB-rpsR-rplI | 27.74 |
rpsF
priB
rpsR
rplI
|
30S ribosomal subunit protein S6 primosomal replication protein N 30S ribosomal subunit protein S18 50S ribosomal subunit protein L9 |
|
rpsMKD-rpoA-rplQ | 27.63 |
rpsD
rpsM
rpsK
rplQ
rpoA
|
30S ribosomal subunit protein S4 30S ribosomal subunit protein S13 30S ribosomal subunit protein S11 50S ribosomal subunit protein L17 RNA polymerase, α subunit |
|
rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ | 26.28 |
rpsC
rplV
rplW
rpsJ
rplP
rpsS
rpsQ
rpmC
rplD
rplB
rplC
|
30S ribosomal subunit protein S3 50S ribosomal subunit protein L22 50S ribosomal subunit protein L23 30S ribosomal subunit protein S10 50S ribosomal subunit protein L16 30S ribosomal subunit protein S19 30S ribosomal subunit protein S17 50S ribosomal subunit protein L29 50S ribosomal subunit protein L4 50S ribosomal subunit protein L2 50S ribosomal subunit protein L3 |
|
aroKB-damX-dam-rpe-gph-trpS | 26.25 |
damX
gph
dam
aroB
rpe
trpS
aroK
|
cell division protein DamX phosphoglycolate phosphatase DNA adenine methyltransferase 3-dehydroquinate synthase ribulose-5-phosphate 3-epimerase tryptophan-tRNA ligase shikimate kinase I |
|
tff-rpsB-tsf | 25.82 |
tsf
tff
rpsB
|
protein chain elongation factor EF-Ts Tff 30S ribosomal subunit protein S2 |
|
icd | 24.49 |
icd
|
isocitrate dehydrogenase |
|
atpIBEFHAGDC | 24.46 |
atpI
atpH
atpC
atpB
atpA
atpG
atpF
atpE
atpD
|
AtpI ATP synthase F1 complex - delta subunit ATP synthase F1 complex - epsilon subunit ATP synthase F0 complex - a subunit ATP synthase F1 complex - alpha subunit ATP synthase F1 complex - gamma subunit ATP synthase F0 complex - b subunit ATP synthase F0 complex - subunit c ATP synthase F1 complex - beta subunit |
|
rplM-rpsI | 24.36 |
rplM
rpsI
|
50S ribosomal subunit protein L13 30S ribosomal subunit protein S9 |
|
gapA | 24.21 |
gapA
|
glyceraldehyde 3-phosphate dehydrogenase |
|
kdsC-lptCAB | 23.57 |
kdsC
lptA
lptB
lptC
|
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase LptA LptB LptC |
|
rpsP-rimM-trmD-rplS | 23.50 |
rplS
rimM
trmD
rpsP
|
50S ribosomal subunit protein L19 ribosome maturation protein tRNA m1G37 methyltransferase 30S ribosomal subunit protein S16 |
|
rpsU-dnaG-rpoD | 23.19 |
rpsU
dnaG
rpoD
|
30S ribosomal subunit protein S21 DNA primase RNA polymerase, sigma 70 (sigma D) factor |
|
lrp | 22.48 |
lrp
|
Lrp transcriptional dual regulator |
|
cmk-rpsA | 21.05 |
cmk
rpsA
|
cytidylate kinase 30S ribosomal subunit protein S1 |
|
hfq-hflXKC | 20.55 |
hflC
hfq
hflK
hflX
|
regulator of FtsH protease RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins regulator of FtsH protease ribosome-dissociating factor, GTPase |
|
folE-yeiB | 20.18 |
folE
yeiB
|
GTP cyclohydrolase I conserved inner membrane protein |
|
ilvC | 19.25 |
ilvC
|
acetohydroxy acid isomeroreductase |
|
metH | 18.99 |
metH
|
cobalamin-dependent methionine synthase |
|
pgk | 18.83 |
pgk
|
phosphoglycerate kinase |
|
rpmI-rplT | 18.64 |
rpmI
rplT
|
50S ribosomal subunit protein L35 50S ribosomal subunit protein L20 |
|
pcnB-folK | 18.14 |
pcnB
folK
|
poly(A) polymerase I 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase |
|
cysPUWAM | 18.11 |
cysU
cysM
cysW
cysA
cysP
|
sulfate / thiosulfate ABC transporter - membrane subunit cysteine synthase B sulfate / thiosulfate ABC transporter - membrane subunit sulfate / thiosulfate ABC transporter - ATP binding subunit sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP |
|
dusB-fis | 18.07 |
fis
dusB
|
Fis DNA-binding transcriptional dual regulator tRNA-dihydrouridine synthase B |
|
malPQ | 18.00 |
malP
malQ
|
maltodextrin phosphorylase amylomaltase/amylomaltase/amylomaltase |
|
rplY | 17.89 |
rplY
|
50S ribosomal subunit protein L25 |
|
infA | 17.84 |
infA
|
protein chain initiation factor IF-1 |
|
nuoABCEFGHIJKLMN | 17.82 |
nuoB
nuoC
nuoA
nuoF
nuoG
nuoE
nuoJ
nuoK
nuoH
nuoI
nuoN
nuoL
nuoM
|
NADH:ubiquinone oxidoreductase, chain B NADH:ubiquinone oxidoreductase, chain CD NADH:ubiquinone oxidoreductase, membrane subunit A NADH:ubiquinone oxidoreductase, chain F NADH:ubiquinone oxidoreductase, chain G NADH:ubiquinone oxidoreductase, chain E NADH:ubiquinone oxidoreductase, membrane subunit J NADH:ubiquinone oxidoreductase, membrane subunit K NADH:ubiquinone oxidoreductase, membrane subunit H NADH:ubiquinone oxidoreductase, chain I NADH:ubiquinone oxidoreductase, membrane subunit N NADH:ubiquinone oxidoreductase, membrane subunit L NADH:ubiquinone oxidoreductase, membrane subunit M |
|
trxA | 17.48 |
trxA
|
thioredoxin 1 |
|
rnb | 17.47 |
rnb
|
ribonuclease II |
|
hisBHAFI | 17.45 |
hisF
hisH
hisA
hisB
hisI
|
imidazole glycerol phosphate synthase, HisF subunit imidazole glycerol phosphate synthase, HisH subunit N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase |
|
cysDNC | 17.36 |
cysD
cysN
cysC
|
sulfate adenylyltransferase, CysD subunit sulfate adenylyltransferase, CysN subunit adenylylsulfate kinase |
|
glmUS | 17.34 |
glmU
glmS
|
fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase L-glutamine:D-fructose-6-phosphate aminotransferase |
|
serC-aroA | 17.33 |
aroA
|
3-phosphoshikimate-1-carboxyvinyltransferase |
|
flhBAE | 17.28 |
flhB
flhA
flhE
|
flagellar biosynthesis protein FlhB flagellar biosynthesis protein FlhA flagellar protein |
|
pepA | 17.02 |
pepA
|
aminopeptidase A/I |
|
opgGH | 16.86 |
opgG
opgH
|
periplasmic protein associated with synthesis of osmoregulated periplasmic glucans (OPGs) membrane glycosyltransferase; synthesis of osmoregulated periplasmic glucans (OPGs) |
|
relA-mazEF | 16.86 |
mazE
relA
mazF
|
MazE antitoxin of the MazF-MazE toxin-antitoxin system GDP pyrophosphokinase/GTP pyrophosphokinase MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity |
|
cysJIH | 16.74 |
cysI
cysH
cysJ
|
sulfite reductase, hemoprotein subunit 3'-phospho-adenylylsulfate reductase sulfite reductase, flavoprotein subunit |
|
dadAX | 16.66 |
dadA
dadX
|
D-amino acid dehydrogenase alanine racemase 2, PLP-binding |
|
focA-pflB | 16.50 |
focA
pflB
|
formate channel FocA pyruvate formate-lyase (inactive) |
|
infC-rpmI-rplT | 16.41 |
rpmI
rplT
infC
|
50S ribosomal subunit protein L35 50S ribosomal subunit protein L20 protein chain initiation factor IF-3 |
|
carAB | 16.21 |
carB
carA
|
carbamoyl phosphate synthetase, β chain carbamoyl phosphate synthetase, α chain |
|
yrbN-deaD | 15.98 |
yrbN
deaD
|
small protein DeaD, DEAD-box RNA helicase |
|
glyA | 15.53 |
glyA
|
serine hydroxymethyltransferase |
|
aceEF | 15.38 |
aceF
aceE
|
pyruvate dehydrogenase, E2 subunit subunit of E1p component of pyruvate dehydrogenase complex |
|
rimP-nusA-infB | 15.12 |
rimP
infB
nusA
|
ribosome maturation factor RimP protein chain initiation factor IF2 transcription termination/antitermination L factor |
|
dppABCDF | 15.03 |
dppA
dppB
dppC
dppD
dppF
|
dipeptide ABC transporter - periplasmic binding protein dipeptide ABC transporter - predicted membrane subunit dipeptide ABC transporter - predicted membrane subunit dipeptide ABC transporter - predicted ATP binding subunit dipeptide ABC transporter - predicted ATP binding subunit |
|
rplU-rpmA | 14.94 |
rpmA
rplU
|
50S ribosomal subunit protein L27 50S ribosomal subunit protein L21 |
|
flgAMN | 14.84 |
flgA
flgN
flgM
|
flagellar biosynthesis; assembly of basal-body periplasmic P ring flagellar biosynthesis protein FlgN anti-sigma factor for FliA (σ28) |
|
pnp | 14.83 |
pnp
|
polynucleotide phosphorylase |
|
malEFG | 14.82 |
malF
malG
malE
|
maltose ABC transporter - membrane subunit maltose ABC transporter - membrane subunit maltose ABC transporter - periplasmic binding protein |
|
cydAB | 14.70 |
cydA
cydB
|
cytochrome bd-I terminal oxidase subunit I cytochrome bd-I terminal oxidase subunit II |
|
cmoM-mukFEB | 14.62 |
cmoM
mukB
mukF
mukE
|
tRNA cmo5U34 methyltransferase cell division protein involved in chromosome partitioning Ca2+-binding protein involved in chromosome partitioning protein involved in chromosome partitioning |
|
livJ | 14.60 |
livJ
|
branched chain amino acid / phenylalanine ABC transporter - periplasmic binding protein |
|
spf | 14.52 |
spf
|
Spot42 |
|
asnA | 14.51 |
asnA
|
asparagine synthetase A |
|
yobF-cspC | 14.45 |
yobF
cspC
|
small protein involved in stress responses stress protein, member of the CspA family |
|
pntAB | 14.24 |
pntB
pntA
|
pyridine nucleotide transhydrogenase, β subunit pyridine nucleotide transhydrogenase, α subunit |
|
rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM | 14.20 |
rffG
rffC
wecE
wzxE
rffM
wzyE
rffH
wecB
rffT
wzzE
wecC
rfe
|
dTDP-glucose 4,6-dehydratase 2 dTDP-fucosamine acetyltransferase dTDP-4-dehydro-6-deoxy-D-glucose transaminase lipid III flippase UDP-N-acetyl-D-mannosaminuronic acid transferase predicted Wzy protein involved in ECA polysaccharide chain elongation dTDP-glucose pyrophosphorylase 2 UDP-N-acetylglucosamine 2-epimerase 4-acetamido-4,6-dideoxy-D-galactose transferase Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein UDP-N-acetyl-D-mannosamine dehydrogenase undecaprenyl-phosphate α-N-acetylglucosaminyl transferase |
|
rplU-rpmA-yhbE-obgE | 14.17 |
rpmA
yhbE
rplU
obgE
|
50S ribosomal subunit protein L27 inner membrane protein YhbE 50S ribosomal subunit protein L21 GTPase involved in chromosome partitioning and ribosome assembly |
|
dnaN-recF | 14.11 |
recF
dnaN
|
ssDNA and dsDNA binding, ATP binding DNA polymerase III, β subunit |
|
udp | 14.09 |
udp
|
uridine phosphorylase |
|
mreBCD | 14.08 |
mreB
mreC
mreD
|
dynamic cytoskeletal protein MreB membrane protein required for maintenance of rod shape membrane protein required for maintenance of rod shape |
|
serC | 14.05 |
|
|
|
artPIQM | 14.04 |
artQ
artP
artI
artM
|
L-arginine ABC transporter - membrane subunit L-arginine ABC transporter - ATP binding subunit periplasmic binding protein ArtI L-arginine ABC transporter - membrane subunit |
|
cusCFBA | 13.88 |
cusA
cusC
cusB
cusF
|
copper / silver exporter - membrane subunit copper / silver exporter - outer membrane porin copper / silver exporter - membrane fusion protein copper / silver exporter - periplasmic binding protein and metallochaperone |
|
ribF-ileS-lspA-fkpB-ispH | 13.84 |
lspA
ileS
ispH
fkpB
ribF
|
prolipoprotein signal peptidase II isoleucine-tRNA ligase 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase peptidyl-prolyl cis-trans isomerase bifunctional riboflavin kinase / FMN adenylyltransferase |
|
tatABC | 13.66 |
tatA
tatC
tatB
|
twin arginine protein translocation system - TatA protein twin arginine protein translocation system - TatC protein twin arginine protein translocation system - TatB protein |
|
ftsK | 13.56 |
ftsK
|
essential cell division protein FtsK |
|
rpoN-hpf-ptsN-rapZ-npr | 13.53 |
rapZ
ptsN
rpoN
npr
hpf
|
RNase adaptor protein phosphotransferase system enzyme IIA, regulation of potassium transport RNA polymerase, sigma 54 (sigma N) factor phosphorelay protein Npr hibernation promoting factor |
|
tatABCD | 13.47 |
tatD
tatA
tatC
tatB
|
ssDNA/RNA exonuclease, 3' → 5' specific twin arginine protein translocation system - TatA protein twin arginine protein translocation system - TatC protein twin arginine protein translocation system - TatB protein |
|
dapA-bamC | 13.39 |
dapA
bamC
|
4-hydroxy-tetrahydrodipicolinate synthase Outer Membrane Protein Assembly Complex - BamC subunit |
|
aroG | 13.37 |
aroG
|
2-dehydro-3-deoxyphosphoheptonate aldolase |
|
lptD | 13.30 |
lptD
|
outer membrane lipopolysaccharide transport and assembly complex - LptD subunit |
|
glyQS | 13.26 |
glyS
glyQ
|
glycine-tRNA ligase, β subunit glycine-tRNA ligase, α subunit |
|
proP | 13.16 |
proP
|
osmolyte:H+ symporter ProP |
|
galETKM | 13.07 |
galT
galE
galM
galK
|
galactose-1-phosphate uridylyltransferase UDP-glucose 4-epimerase galactose-1-epimerase galactokinase |
|
aroF-tyrA | 13.05 |
tyrA
aroF
|
chorismate mutase / prephenate dehydrogenase 2-dehydro-3-deoxyphosphoheptonate aldolase |
|
ileS-lspA-fkpB-ispH | 12.90 |
ileS
ispH
fkpB
lspA
|
isoleucine-tRNA ligase 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase peptidyl-prolyl cis-trans isomerase prolipoprotein signal peptidase II |
|
livKHMGF | 12.88 |
livG
livF
livM
livK
livH
|
branched chain amino acid / phenylalanine ABC transporter - ATP binding subunit branched chain amino acid / phenylalanine ABC transporter - ATP binding subunit branched chain amino acid / phenylalanine ABC transporter - membrane subunit L-leucine / L-phenylalanine ABC transporter - periplasmic binding protein branched chain amino acid / phenylalanine ABC transporter - membrane subunit |
|
plsX-fabHDG | 12.82 |
plsX
fabG
fabH
fabD
|
fatty acid/phospholipid synthesis protein 3-oxoacyl-[acyl-carrier-protein] reductase subunit β-ketoacyl-ACP synthase III malonyl-CoA-ACP transacylase |
|
trpCBA | 12.79 |
trpB
trpC
trpA
|
tryptophan synthase, β subunit indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase tryptophan synthase, α subunit |
|
mgtLA | 12.74 |
mgtA
mgtL
|
Mg2+ / Ni2+ transporting ATPase predicted leader peptide |
|
copA | 12.71 |
copA
|
Cu+ export ATPase |
|
gyrA | 12.67 |
gyrA
|
DNA gyrase, subunit A |
|
bcp | 12.63 |
bcp
|
thiol peroxidase |
|
hisS | 12.62 |
hisS
|
histidine-tRNA ligase |
|
glnQ | 12.46 |
glnQ
|
L-glutamine ABC transporter - ATP binding subunit |
|
rpsU | 12.44 |
rpsU
|
30S ribosomal subunit protein S21 |
|
sdhDAB | 12.31 |
sdhA
sdhB
sdhD
|
succinate:quinone oxidoreductase, FAD binding protein succinate:quinone oxidoreductase, iron-sulfur cluster binding protein succinate:quinone oxidoreductase, membrane protein SdhD |
|
nudB-yebC-ruvC | 12.28 |
ruvC
nudB
yebC
|
Holliday junction nuclease; resolution of structures; repair dihydroneopterin triphosphate pyrophosphohydrolase conserved protein |
|
epd-pgk-fbaA | 12.27 |
epd
pgk
fbaA
|
erythrose 4-phosphate dehydrogenase phosphoglycerate kinase fructose bisphosphate aldolase class II |
|
glnA | 12.25 |
glnA
|
glutamine synthetase |
|
lspA-fkpB-ispH | 12.15 |
lspA
ispH
fkpB
|
prolipoprotein signal peptidase II 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase peptidyl-prolyl cis-trans isomerase |
|
ftsAZ | 12.10 |
ftsZ
ftsA
|
essential cell division protein FtsZ essential cell division protein FtsA |
|
crp | 12.09 |
crp
|
CRP transcriptional dual regulator |
|
hpt | 12.06 |
hpt
|
hypoxanthine-guanine phosphoribosyltransferase |
|
acnB | 12.05 |
acnB
|
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase |
|
accBC | 12.02 |
accC
accB
|
biotin carboxylase biotin carboxyl carrier protein |
|
evgAS | 11.97 |
evgA
evgS
|
EvgA transcriptional activator EvgS sensory histidine kinase |
|
cysK | 11.78 |
cysK
|
O-acetylserine sulfhydrylase A |
|
flhDC | 11.72 |
flhC
flhD
|
FlhC transcriptional dual regulator FlhD transcriptional dual regulator |
|
valS | 11.69 |
valS
|
valine-tRNA ligase |
|
thrLABC | 11.40 |
thrL
thrB
thrC
thrA
|
thr operon leader peptide homoserine kinase threonine synthase aspartate kinase / homoserine dehydrogenase |
|
lpd | 11.38 |
lpd
|
lipoamide dehydrogenase |
|
gyrB | 11.34 |
gyrB
|
DNA gyrase, subunit B |
|
efp | 11.29 |
efp
|
protein chain elongation factor EF-P |
|
guaBA | 11.14 |
guaB
guaA
|
IMP dehydrogenase GMP synthetase |
|
rdoA-dsbA | 11.05 |
dsbA
rdoA
|
protein disulfide oxidoreductase - DsbAreduced serine/threonine protein kinase |
|
upp-uraA | 11.04 |
upp
uraA
|
uracil phosphoribosyltransferase uracil:H+ symporter UraA |
|
hisJQMP | 11.01 |
hisM
hisP
hisQ
hisJ
|
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - ATP binding subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - membrane subunit histidine ABC transporter - periplasmic binding protein |
|
mutL-miaA-hfq-hflXKC | 10.98 |
miaA
hflC
hfq
hflK
mutL
hflX
|
tRNA(i6A37) synthase regulator of FtsH protease RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins regulator of FtsH protease MutL ribosome-dissociating factor, GTPase |
|
sdhCDAB-sucABCD | 10.98 |
sucA
sucC
sucB
sucD
sdhA
sdhC
sdhB
sdhD
|
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit succinate:quinone oxidoreductase, FAD binding protein succinate:quinone oxidoreductase, membrane protein SdhC succinate:quinone oxidoreductase, iron-sulfur cluster binding protein succinate:quinone oxidoreductase, membrane protein SdhD |
|
miaA-hfq-hflXKC | 10.97 |
miaA
hflC
hfq
hflK
hflX
|
tRNA(i6A37) synthase regulator of FtsH protease RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins regulator of FtsH protease ribosome-dissociating factor, GTPase |
|
pheLA | 10.95 |
pheA
pheL
|
chorismate mutase / prephenate dehydratase leader peptide of chorismate mutase-P-prephenate dehydratase |
|
accA | 10.91 |
accA
|
acetyl-CoA carboxyltransferase, α subunit |
|
damX-dam-rpe-gph-trpS | 10.65 |
dam
damX
rpe
trpS
gph
|
DNA adenine methyltransferase cell division protein DamX ribulose-5-phosphate 3-epimerase tryptophan-tRNA ligase phosphoglycolate phosphatase |
|
yibN-grxC-secB-gpsA | 10.62 |
grxC
gpsA
secB
yibN
|
reduced glutaredoxin 3 glycerol-3-phosphate dehydrogenase SecB chaperone predicted rhodanese-related sulfurtransferase |
|
trpLEDCBA | 10.62 |
trpL
trpB
trpC
trpA
trpD
trpE
|
trp operon leader peptide tryptophan synthase, β subunit indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase tryptophan synthase, α subunit anthranilate synthase component II anthranilate synthase component I |
|
glnALG | 10.50 |
glnL
glnA
glnG
|
NtrB glutamine synthetase NtrC transcriptional dual regulator |
|
gltBDF | 10.45 |
gltB
gltD
gltF
|
glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein |
|
yebC-ruvC | 10.45 |
ruvC
yebC
|
Holliday junction nuclease; resolution of structures; repair conserved protein |
|
hscBA-fdx-iscX | 10.44 |
hscB
fdx
hscA
iscX
|
co-chaperone for [Fe-S] cluster biosynthesis reduced ferredoxin chaperone for [Fe-S] cluster biosynthesis regulator of iron-sulfur cluster assembly |
|
proVWX | 10.31 |
proX
proW
proV
|
glycine betaine / proline ABC transporter - periplasmic binding protein glycine betaine / proline ABC transporter - membrane subunit glycine betaine / proline ABC transporter - ATP binding subunit |
|
lolA-rarA | 10.27 |
rarA
lolA
|
recombination factor periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer |
|
ptsG | 10.25 |
ptsG
|
glucose PTS permease - PtsG subunit |
|
argCBH | 10.22 |
argH
argB
argC
|
argininosuccinate lyase acetylglutamate kinase N-acetylglutamylphosphate reductase |
|
nrdAB-yfaE | 10.17 |
nrdA
nrdB
yfaE
|
ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance |
|
mrp | 10.11 |
mrp
|
P-loop NTPase family protein |
|
yacC-speED | 10.09 |
yacC
speD
speE
|
predicted protein adenosylmethionine decarboxylase, proenzyme spermidine synthase |
|
ysgA | 10.09 |
ysgA
|
predicted hydrolase |
|
yrbG-kdsDC-lptCAB | 10.03 |
kdsC
kdsD
yrbG
lptA
lptB
lptC
|
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase D-arabinose 5-phosphate isomerase inner membrane protein YrbG LptA LptB LptC |
|
sohB | 9.91 |
sohB
|
predicted inner membrane peptidase |
|
pfkA | 9.88 |
pfkA
|
6-phosphofructokinase I |
|
acpP-fabF | 9.83 |
fabF
acpP
|
β-ketoacyl-ACP synthase II apo-[acyl carrier protein] |
|
rpoZ-spoT-trmH-recG | 9.83 |
rpoZ
spoT
recG
trmH
|
RNA polymerase, ω subunit guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase/GDP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase RecG DNA helicase tRNA (Gm18) 2'-O-methyltransferase |
|
ftnA | 9.72 |
ftnA
|
ferritin iron storage protein |
|
lysC | 9.63 |
lysC
|
aspartate kinase III |
|
ppiD | 9.58 |
ppiD
|
periplasmic folding chaperone |
|
pepD | 9.55 |
pepD
|
peptidase D |
|
acpP | 9.51 |
acpP
|
apo-[acyl carrier protein] |
|
putP | 9.48 |
putP
|
proline:Na+ symporter |
|
sodA | 9.39 |
sodA
|
superoxide dismutase (Mn) |
|
dam-rpe-gph-trpS | 9.38 |
gph
dam
rpe
trpS
|
phosphoglycolate phosphatase DNA adenine methyltransferase ribulose-5-phosphate 3-epimerase tryptophan-tRNA ligase |
|
sodB | 9.34 |
sodB
|
superoxide dismutase (Fe) |
|
ndh | 9.26 |
ndh
|
NADH:quinone oxidoreductase II |
|
ptrA-recBD | 9.13 |
recB
recD
ptrA
|
RecB RecD protease III |
|
deoCABD | 9.02 |
deoA
deoB
deoC
deoD
|
thymidine phosphorylase / uracil phosphorylase phosphopentomutase deoxyribose-phosphate aldolase purine nucleoside phosphorylase |
|
shiA | 8.99 |
shiA
|
shikimate:H+ symporter |
|
ryfD | 8.98 |
ryfD
|
RyfD |
|
gcd | 8.97 |
gcd
|
quinoprotein glucose dehydrogenase |
|
greA | 8.92 |
greA
|
transcription elongation factor GreA |
|
frr | 8.88 |
frr
|
ribosome recycling factor |
|
symR | 8.81 |
symR
|
SymR |
|
menA-rraA | 8.79 |
rraA
menA
|
ribonuclease E inhibitor protein A 1,4-dihydroxy-2-naphthoate octaprenyltransferase |
|
pykA | 8.77 |
pykA
|
pyruvate kinase II |
|
stpA | 8.76 |
stpA
|
H-NS-like DNA-binding transcriptional repressor with RNA chaperone activity |
|
secB-gpsA | 8.76 |
gpsA
secB
|
glycerol-3-phosphate dehydrogenase SecB chaperone |
|
malK-lamB-malM | 8.73 |
lamB
malM
malK
|
maltose outer membrane porin / phage lambda receptor protein maltose regulon periplasmic protein maltose ABC transporter - ATP binding subunit |
|
panD | 8.67 |
panD
|
PanD proenzyme, π protein |
|
btuB-murI | 8.61 |
murI
btuB
|
glutamate racemase vitamin B12 / E colicin / bacteriophage BF23 outer membrane porin BtuB |
|
fepA-entD | 8.57 |
fepA
entD
|
ferric enterobactin / colicin B / colicin D outer membrane porin FepA phosphopantetheinyl transferase/phosphopantetheinyl transferase |
|
mgrR | 8.52 |
mgrR
|
MgrR |
|
metG | 8.43 |
metG
|
methionine-tRNA ligase |
|
dsbA | 8.39 |
dsbA
|
protein disulfide oxidoreductase - DsbAreduced |
|
sgrR-sroA-tbpA-thiPQ | 8.37 |
thiP
tbpA
thiQ
sgrR
sroA
|
thiamin ABC transporter - membrane subunit thiamin ABC transporter - periplasmic binding protein thiamin ABC transporter - ATP binding subunit SgrR DNA-binding transcriptional dual regulator SroA |
|
cbpAM | 8.14 |
cbpM
cbpA
|
chaperone modulator protein CbpM chaperone with DnaK; curved DNA-binding protein |
|
yccA | 8.10 |
yccA
|
putative carrier/transport protein; substrate or modulator of FtsH-mediated proteolysis |
|
eno | 8.07 |
eno
|
enolase |
|
tpiA | 8.06 |
tpiA
|
triosephosphate isomerase |
|
ynfEFGH-dmsD | 8.03 |
ynfG
ynfF
ynfE
dmsD
ynfH
|
putative selenate reductase, predicted Fe-S subunit putative selenate reductase, oxidoreductase subunit putative selenate reductase, oxidoreductase subunit DMS reductase maturation protein putative selenate reductase, predicted membrane anchor subunit |
|
ilvLXG_1G_2MEDA | 8.03 |
ilvE
ilvX
ilvM
ilvL
ilvG_1
ilvD
ilvG_2
ilvA
|
branched-chain amino-acid aminotransferase small protein acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit ilvGEDA operon leader peptide acetolactate synthase II, large subunit, N-ter fragment (pseudogene) dihydroxy acid dehydratase acetolactate synthase II, large subunit, C-ter fragment (pseudogene) threonine deaminase |
|
metNIQ | 7.98 |
metI
metN
metQ
|
L-methionine / D-methionine ABC transporter - membrane subunit L-methionine / D-methionine ABC transporter - ATP binding subunit L-methionine / D-methionine ABC transporter - periplasmic binding protein |
|
rlmE-ftsH | 7.92 |
rlmE
ftsH
|
23S rRNA 2'-O-ribose U2552 methyltransferase ATP-dependent zinc metalloprotease FtsH |
|
mdh | 7.87 |
mdh
|
malate dehydrogenase |
|
grxD | 7.87 |
grxD
|
glutaredoxin 4 |
|
glgCAP | 7.80 |
glgP
glgA
glgC
|
glycogen phosphorylase glycogen synthase glucose-1-phosphate adenylyltransferase |
|
ygfB-pepP-ubiHI | 7.79 |
ygfB
pepP
ubiH
ubiI
|
predicted protein proline aminopeptidase P II 2-octaprenyl-6-methoxyphenol hydroxylase 2-octaprenylphenol hydroxylase |
|
purC | 7.71 |
purC
|
phosphoribosylaminoimidazole-succinocarboxamide synthase |
|
prs | 7.70 |
prs
|
ribose-phosphate diphosphokinase |
|
nagBAC-umpH | 7.68 |
nagB
nagC
umpH
nagA
|
glucosamine-6-phosphate deaminase NagC DNA-binding transcriptional dual regulator UMP phosphatase N-acetylglucosamine-6-phosphate deacetylase |
|
mreB | 7.55 |
mreB
|
dynamic cytoskeletal protein MreB |
|
tpx | 7.55 |
tpx
|
lipid hydroperoxide peroxidase |
|
nrdR-ribDE-nusB-thiL-pgpA | 7.53 |
nusB
nrdR
thiL
pgpA
ribE
ribD
|
transcription antitermination protein NusB NrdR transcriptional repressor thiamine monophosphate kinase phosphatidylglycerophosphatase A 6,7-dimethyl-8-ribityllumazine synthase fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase |
|
pdhR-aceEF-lpd | 7.53 |
pdhR
lpd
aceF
aceE
|
PdhR DNA-binding transcriptional dual regulator lipoamide dehydrogenase pyruvate dehydrogenase, E2 subunit subunit of E1p component of pyruvate dehydrogenase complex |
|
uvrA | 7.48 |
uvrA
|
excision nuclease subunit A |
|
fimB | 7.47 |
fimB
|
regulator for fimA |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
22.7 | 68.2 | GO:0006265 | DNA topological change(GO:0006265) |
21.5 | 107.4 | GO:2000765 | regulation of cytoplasmic translation(GO:2000765) |
20.5 | 20.5 | GO:0045975 | viral latency(GO:0019042) negative regulation of translation, ncRNA-mediated(GO:0040033) regulation of translation, ncRNA-mediated(GO:0045974) positive regulation of translation, ncRNA-mediated(GO:0045975) |
20.3 | 81.3 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
16.4 | 16.4 | GO:1903008 | ribosome disassembly(GO:0032790) ribonucleoprotein complex disassembly(GO:0032988) organelle disassembly(GO:1903008) |
15.4 | 46.3 | GO:0006306 | DNA alkylation(GO:0006305) DNA methylation(GO:0006306) DNA methylation on adenine(GO:0032775) cell cycle DNA replication initiation(GO:1902292) bacterial-type DNA replication initiation(GO:1902328) |
14.0 | 42.1 | GO:0043242 | negative regulation of protein complex disassembly(GO:0043242) negative regulation of DNA-templated transcription, termination(GO:0060567) |
13.9 | 69.3 | GO:0006276 | plasmid maintenance(GO:0006276) |
13.8 | 55.3 | GO:0045727 | positive regulation of cellular amide metabolic process(GO:0034250) positive regulation of translation(GO:0045727) |
13.0 | 38.9 | GO:0097304 | lipoprotein biosynthetic process via signal peptide cleavage(GO:0097304) |
11.7 | 35.1 | GO:0032074 | negative regulation of nuclease activity(GO:0032074) negative regulation of ribonuclease activity(GO:0060701) negative regulation of endoribonuclease activity(GO:0060702) |
11.4 | 34.3 | GO:0034661 | ncRNA catabolic process(GO:0034661) |
11.1 | 33.2 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
11.0 | 11.0 | GO:0043174 | nucleoside salvage(GO:0043174) |
10.3 | 30.9 | GO:0010272 | response to silver ion(GO:0010272) |
10.3 | 41.2 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
10.3 | 41.2 | GO:0006544 | glycine metabolic process(GO:0006544) glycine catabolic process(GO:0006546) |
10.2 | 30.7 | GO:0006570 | tyrosine metabolic process(GO:0006570) tyrosine biosynthetic process(GO:0006571) |
10.0 | 29.9 | GO:0006535 | cysteine biosynthetic process from serine(GO:0006535) |
9.9 | 29.7 | GO:0072321 | chaperone-mediated protein transport(GO:0072321) |
9.7 | 29.0 | GO:0006551 | leucine metabolic process(GO:0006551) leucine biosynthetic process(GO:0009098) |
9.3 | 18.6 | GO:0009225 | nucleotide-sugar metabolic process(GO:0009225) nucleotide-sugar biosynthetic process(GO:0009226) |
9.2 | 27.5 | GO:0015820 | branched-chain amino acid transport(GO:0015803) leucine transport(GO:0015820) |
9.1 | 64.0 | GO:0007059 | chromosome segregation(GO:0007059) |
8.8 | 26.4 | GO:0046049 | pyrimidine nucleotide catabolic process(GO:0006244) nucleoside monophosphate catabolic process(GO:0009125) pyrimidine nucleoside monophosphate catabolic process(GO:0009131) ribonucleoside monophosphate catabolic process(GO:0009158) pyrimidine ribonucleoside monophosphate metabolic process(GO:0009173) pyrimidine ribonucleoside monophosphate catabolic process(GO:0009175) pyrimidine ribonucleotide metabolic process(GO:0009218) pyrimidine ribonucleotide catabolic process(GO:0009222) ribonucleotide catabolic process(GO:0009261) UMP metabolic process(GO:0046049) UMP catabolic process(GO:0046050) |
8.7 | 52.3 | GO:0015920 | lipopolysaccharide transport(GO:0015920) |
8.7 | 17.3 | GO:0046417 | chorismate metabolic process(GO:0046417) |
8.6 | 25.9 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
8.5 | 144.9 | GO:0006096 | glycolytic process(GO:0006096) |
8.4 | 25.3 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
8.3 | 24.8 | GO:0045900 | negative regulation of translational elongation(GO:0045900) |
7.9 | 31.7 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
7.9 | 23.7 | GO:1901070 | GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037) guanosine-containing compound biosynthetic process(GO:1901070) |
7.7 | 23.0 | GO:0015768 | maltose transport(GO:0015768) |
7.6 | 22.9 | GO:0009651 | response to salt stress(GO:0009651) |
7.5 | 37.6 | GO:0005980 | glycogen catabolic process(GO:0005980) |
7.5 | 22.5 | GO:0071932 | replication fork reversal(GO:0071932) |
7.4 | 7.4 | GO:0051181 | cofactor transport(GO:0051181) |
7.3 | 14.5 | GO:0090501 | RNA phosphodiester bond hydrolysis(GO:0090501) |
7.1 | 35.7 | GO:0000162 | tryptophan biosynthetic process(GO:0000162) indole-containing compound biosynthetic process(GO:0042435) indolalkylamine biosynthetic process(GO:0046219) |
7.1 | 14.2 | GO:0006818 | hydrogen transport(GO:0006818) proton transport(GO:0015992) |
7.1 | 21.3 | GO:0035672 | oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672) |
7.0 | 7.0 | GO:0046490 | isoprenoid metabolic process(GO:0006720) isoprenoid biosynthetic process(GO:0008299) isopentenyl diphosphate biosynthetic process(GO:0009240) isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288) isopentenyl diphosphate metabolic process(GO:0046490) |
6.5 | 19.6 | GO:0000303 | response to superoxide(GO:0000303) |
6.5 | 25.9 | GO:0006541 | glutamine metabolic process(GO:0006541) |
6.5 | 6.5 | GO:0046040 | IMP metabolic process(GO:0046040) |
6.3 | 6.3 | GO:0042816 | pyridoxine metabolic process(GO:0008614) pyridoxine biosynthetic process(GO:0008615) vitamin B6 metabolic process(GO:0042816) vitamin B6 biosynthetic process(GO:0042819) |
6.3 | 25.0 | GO:1902837 | amino acid import(GO:0043090) L-arginine import(GO:0043091) L-amino acid import(GO:0043092) amino acid import across plasma membrane(GO:0089718) arginine import(GO:0090467) L-arginine import across plasma membrane(GO:0097638) L-arginine import into cell(GO:1902765) amino acid import into cell(GO:1902837) L-arginine transmembrane transport(GO:1903400) arginine transmembrane transport(GO:1903826) |
6.2 | 30.9 | GO:0017004 | cytochrome complex assembly(GO:0017004) |
6.2 | 6.2 | GO:0009152 | purine ribonucleotide biosynthetic process(GO:0009152) ribonucleotide biosynthetic process(GO:0009260) |
6.1 | 73.8 | GO:0006418 | tRNA aminoacylation for protein translation(GO:0006418) tRNA aminoacylation(GO:0043039) |
6.1 | 18.4 | GO:0019877 | diaminopimelate biosynthetic process(GO:0019877) |
6.0 | 36.1 | GO:0006566 | threonine metabolic process(GO:0006566) |
5.9 | 17.6 | GO:0019540 | siderophore metabolic process(GO:0009237) enterobactin metabolic process(GO:0009238) enterobactin biosynthetic process(GO:0009239) catechol-containing compound metabolic process(GO:0009712) catechol-containing compound biosynthetic process(GO:0009713) nonribosomal peptide biosynthetic process(GO:0019184) siderophore biosynthetic process(GO:0019290) siderophore biosynthetic process from catechol(GO:0019540) secondary metabolite biosynthetic process(GO:0044550) phenol-containing compound biosynthetic process(GO:0046189) |
5.7 | 28.4 | GO:0046400 | keto-3-deoxy-D-manno-octulosonic acid biosynthetic process(GO:0019294) keto-3-deoxy-D-manno-octulosonic acid metabolic process(GO:0046400) |
5.7 | 11.3 | GO:0042181 | ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744) ketone biosynthetic process(GO:0042181) quinone metabolic process(GO:1901661) quinone biosynthetic process(GO:1901663) |
5.5 | 22.1 | GO:0009163 | nucleoside biosynthetic process(GO:0009163) glycosyl compound biosynthetic process(GO:1901659) |
5.4 | 10.9 | GO:0006528 | asparagine metabolic process(GO:0006528) |
5.3 | 37.4 | GO:0051276 | chromosome organization(GO:0051276) |
5.3 | 26.6 | GO:0042273 | ribosomal large subunit assembly(GO:0000027) ribosomal large subunit biogenesis(GO:0042273) |
5.3 | 15.9 | GO:0009250 | glucan biosynthetic process(GO:0009250) |
5.2 | 10.3 | GO:0072337 | modified amino acid transport(GO:0072337) |
5.1 | 15.2 | GO:0006573 | valine metabolic process(GO:0006573) |
5.0 | 10.0 | GO:0009264 | deoxyribonucleotide catabolic process(GO:0009264) |
4.8 | 14.5 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
4.6 | 18.3 | GO:0046144 | alanine metabolic process(GO:0006522) pyruvate family amino acid metabolic process(GO:0009078) L-alanine metabolic process(GO:0042851) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) |
4.5 | 9.0 | GO:0006007 | glucose catabolic process(GO:0006007) |
4.5 | 17.9 | GO:0015889 | cobalamin transport(GO:0015889) |
4.4 | 13.3 | GO:0043687 | post-translational protein modification(GO:0043687) |
4.4 | 17.5 | GO:0019388 | galactose metabolic process(GO:0006012) galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499) |
4.4 | 35.0 | GO:0006261 | DNA-dependent DNA replication(GO:0006261) |
4.3 | 12.8 | GO:0030497 | fatty acid elongation(GO:0030497) |
4.1 | 28.9 | GO:0006364 | rRNA processing(GO:0006364) rRNA metabolic process(GO:0016072) |
4.1 | 12.3 | GO:0009073 | aromatic amino acid family biosynthetic process(GO:0009073) |
4.1 | 16.4 | GO:0007584 | response to nutrient(GO:0007584) |
4.0 | 4.0 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
4.0 | 12.0 | GO:0019626 | propionate metabolic process(GO:0019541) short-chain fatty acid catabolic process(GO:0019626) |
4.0 | 8.0 | GO:0000101 | sulfur amino acid transport(GO:0000101) |
4.0 | 19.8 | GO:0051258 | protein polymerization(GO:0051258) |
3.9 | 7.8 | GO:0001522 | pseudouridine synthesis(GO:0001522) tRNA pseudouridine synthesis(GO:0031119) |
3.8 | 7.5 | GO:0006772 | thiamine metabolic process(GO:0006772) thiamine biosynthetic process(GO:0009228) thiamine-containing compound metabolic process(GO:0042723) thiamine-containing compound biosynthetic process(GO:0042724) |
3.8 | 18.8 | GO:0015804 | neutral amino acid transport(GO:0015804) |
3.7 | 11.0 | GO:1990748 | cellular oxidant detoxification(GO:0098869) cellular detoxification(GO:1990748) |
3.5 | 10.6 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
3.5 | 10.6 | GO:0002181 | cytoplasmic translation(GO:0002181) |
3.5 | 10.4 | GO:0070417 | cellular response to cold(GO:0070417) |
3.4 | 37.9 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
3.4 | 6.8 | GO:0006479 | protein methylation(GO:0006479) protein alkylation(GO:0008213) |
3.4 | 16.8 | GO:0008653 | lipopolysaccharide metabolic process(GO:0008653) |
3.3 | 3.3 | GO:0043101 | purine-containing compound salvage(GO:0043101) |
3.3 | 43.3 | GO:0006970 | response to osmotic stress(GO:0006970) |
3.3 | 6.6 | GO:1902410 | mitotic cell cycle(GO:0000278) mitotic cytokinesis(GO:0000281) barrier septum assembly(GO:0000917) cytokinetic process(GO:0032506) cytoskeleton-dependent cytokinesis(GO:0061640) cell septum assembly(GO:0090529) mitotic cytokinetic process(GO:1902410) mitotic cell cycle process(GO:1903047) |
3.3 | 9.9 | GO:0009129 | pyrimidine nucleoside monophosphate metabolic process(GO:0009129) pyrimidine nucleoside monophosphate biosynthetic process(GO:0009130) deoxyribonucleoside monophosphate biosynthetic process(GO:0009157) deoxyribonucleoside monophosphate metabolic process(GO:0009162) pyrimidine deoxyribonucleoside monophosphate metabolic process(GO:0009176) pyrimidine deoxyribonucleoside monophosphate biosynthetic process(GO:0009177) pyrimidine deoxyribonucleotide metabolic process(GO:0009219) pyrimidine deoxyribonucleotide biosynthetic process(GO:0009221) |
3.2 | 9.7 | GO:0061727 | methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) methylglyoxal catabolic process to lactate(GO:0061727) |
3.2 | 9.6 | GO:0043171 | peptide catabolic process(GO:0043171) |
3.2 | 15.9 | GO:0006090 | pyruvate metabolic process(GO:0006090) |
3.1 | 6.3 | GO:0009092 | homoserine biosynthetic process(GO:0009090) homoserine metabolic process(GO:0009092) |
3.1 | 15.4 | GO:0006098 | pentose-phosphate shunt(GO:0006098) glucose 6-phosphate metabolic process(GO:0051156) |
3.0 | 6.0 | GO:0046039 | GTP metabolic process(GO:0046039) |
3.0 | 11.9 | GO:0009309 | amine biosynthetic process(GO:0009309) cellular biogenic amine biosynthetic process(GO:0042401) |
2.9 | 5.9 | GO:0051180 | vitamin transport(GO:0051180) |
2.8 | 8.4 | GO:0098739 | import across plasma membrane(GO:0098739) |
2.4 | 14.5 | GO:0030162 | regulation of proteolysis(GO:0030162) |
2.4 | 9.6 | GO:0010043 | response to zinc ion(GO:0010043) |
2.2 | 6.7 | GO:0006952 | defense response(GO:0006952) clearance of foreign intracellular DNA(GO:0044355) |
2.1 | 6.4 | GO:0051828 | entry into host cell(GO:0030260) entry into host(GO:0044409) entry into cell of other organism involved in symbiotic interaction(GO:0051806) entry into other organism involved in symbiotic interaction(GO:0051828) |
2.1 | 12.3 | GO:0006531 | aspartate metabolic process(GO:0006531) |
2.1 | 4.1 | GO:0015755 | fructose transport(GO:0015755) |
1.9 | 5.8 | GO:0009263 | deoxyribonucleotide metabolic process(GO:0009262) deoxyribonucleotide biosynthetic process(GO:0009263) |
1.9 | 5.8 | GO:0043433 | negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433) |
1.9 | 14.9 | GO:0097237 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
1.8 | 1.8 | GO:0015835 | peptidoglycan transport(GO:0015835) |
1.8 | 9.1 | GO:0006515 | misfolded or incompletely synthesized protein catabolic process(GO:0006515) |
1.8 | 5.3 | GO:0046390 | ribose phosphate biosynthetic process(GO:0046390) |
1.8 | 7.1 | GO:0015682 | ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512) |
1.8 | 7.1 | GO:0016485 | protein processing(GO:0016485) |
1.7 | 5.0 | GO:0030091 | protein repair(GO:0030091) |
1.5 | 1.5 | GO:0009231 | riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231) flavin-containing compound metabolic process(GO:0042726) flavin-containing compound biosynthetic process(GO:0042727) |
1.5 | 6.1 | GO:0022900 | electron transport chain(GO:0022900) |
1.5 | 6.0 | GO:0009254 | peptidoglycan turnover(GO:0009254) |
1.5 | 6.0 | GO:0006536 | glutamate metabolic process(GO:0006536) |
1.4 | 4.1 | GO:0006164 | purine nucleotide biosynthetic process(GO:0006164) |
1.3 | 2.6 | GO:0043470 | regulation of carbohydrate catabolic process(GO:0043470) |
1.2 | 2.5 | GO:0071941 | nitrogen cycle metabolic process(GO:0071941) |
1.1 | 8.9 | GO:0010212 | response to ionizing radiation(GO:0010212) |
0.9 | 0.9 | GO:0007049 | cell cycle(GO:0007049) cell cycle process(GO:0022402) |
0.8 | 4.2 | GO:0072593 | reactive oxygen species metabolic process(GO:0072593) |
0.7 | 3.3 | GO:0033014 | tetrapyrrole metabolic process(GO:0033013) tetrapyrrole biosynthetic process(GO:0033014) |
0.5 | 1.6 | GO:0015976 | carbon utilization(GO:0015976) |
0.5 | 1.0 | GO:0006298 | mismatch repair(GO:0006298) |
0.5 | 1.5 | GO:0044042 | glucan metabolic process(GO:0044042) |
0.5 | 1.9 | GO:0015801 | aromatic amino acid transport(GO:0015801) |
0.4 | 1.3 | GO:0006650 | glycerophospholipid metabolic process(GO:0006650) glycerolipid biosynthetic process(GO:0045017) glycerophospholipid biosynthetic process(GO:0046474) glycerolipid metabolic process(GO:0046486) |
0.4 | 3.3 | GO:0006855 | drug transmembrane transport(GO:0006855) |
0.4 | 1.1 | GO:0033212 | iron assimilation(GO:0033212) |
0.3 | 4.6 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.3 | 1.2 | GO:0051596 | methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process(GO:0051596) |
0.2 | 4.7 | GO:0009314 | response to radiation(GO:0009314) |
0.2 | 3.7 | GO:0006790 | sulfur compound metabolic process(GO:0006790) |
0.2 | 2.0 | GO:0006508 | proteolysis(GO:0006508) |
0.2 | 0.5 | GO:0001121 | transcription from bacterial-type RNA polymerase promoter(GO:0001121) |
0.2 | 0.3 | GO:0036460 | cellular response to cell envelope stress(GO:0036460) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
15.3 | 245.1 | GO:0022627 | small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627) |
13.2 | 39.7 | GO:0032300 | mismatch repair complex(GO:0032300) |
11.6 | 92.7 | GO:0005618 | cell wall(GO:0005618) |
10.8 | 43.2 | GO:0044427 | chromosome(GO:0005694) chromosomal part(GO:0044427) |
9.9 | 29.7 | GO:0005856 | cytoskeleton(GO:0005856) |
9.1 | 82.1 | GO:0044446 | intracellular organelle part(GO:0044446) |
8.2 | 24.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
7.2 | 21.7 | GO:0045273 | respiratory chain complex II(GO:0045273) plasma membrane respiratory chain complex II(GO:0045274) |
6.9 | 13.7 | GO:0070470 | respiratory chain(GO:0070469) plasma membrane respiratory chain(GO:0070470) respiratory chain complex(GO:0098803) |
6.8 | 20.4 | GO:0070069 | cytochrome complex(GO:0070069) |
6.4 | 96.0 | GO:1990234 | transferase complex(GO:1990234) |
6.1 | 18.3 | GO:0009295 | nucleoid(GO:0009295) |
5.6 | 55.7 | GO:0032153 | cell division site(GO:0032153) |
4.8 | 28.9 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
4.8 | 52.3 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
4.3 | 227.6 | GO:0098796 | membrane protein complex(GO:0098796) |
4.0 | 8.0 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
3.9 | 15.6 | GO:0044445 | cytosolic part(GO:0044445) |
2.9 | 11.5 | GO:0005576 | extracellular region(GO:0005576) |
2.8 | 14.1 | GO:0043228 | non-membrane-bounded organelle(GO:0043228) |
2.6 | 1106.9 | GO:0005829 | cytosol(GO:0005829) |
2.2 | 6.7 | GO:0009338 | exodeoxyribonuclease V complex(GO:0009338) |
0.8 | 2.3 | GO:0098562 | cytoplasmic side of plasma membrane(GO:0009898) cytoplasmic side of membrane(GO:0098562) |
0.5 | 29.0 | GO:0005737 | cytoplasm(GO:0005737) |
0.5 | 4.2 | GO:0044424 | intracellular part(GO:0044424) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
22.7 | 68.2 | GO:0003916 | DNA topoisomerase activity(GO:0003916) |
20.7 | 62.1 | GO:0003984 | acetolactate synthase activity(GO:0003984) |
18.4 | 276.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
17.9 | 17.9 | GO:0019843 | rRNA binding(GO:0019843) |
17.5 | 70.0 | GO:0004618 | phosphoglycerate kinase activity(GO:0004618) |
16.9 | 50.6 | GO:0052381 | tRNA dimethylallyltransferase activity(GO:0052381) |
15.4 | 46.3 | GO:0008967 | phosphoglycolate phosphatase activity(GO:0008967) site-specific DNA-methyltransferase (adenine-specific) activity(GO:0009007) DNA-methyltransferase activity(GO:0009008) chloride ion binding(GO:0031404) S-adenosyl-L-methionine binding(GO:1904047) |
14.0 | 42.1 | GO:0001072 | RNA binding transcription factor activity(GO:0001070) transcription antitermination factor activity, RNA binding(GO:0001072) |
13.2 | 52.9 | GO:0032843 | hydroperoxide reductase activity(GO:0032843) |
13.0 | 39.0 | GO:0017089 | glycolipid transporter activity(GO:0017089) |
13.0 | 38.9 | GO:0042380 | hydroxymethylbutenyl pyrophosphate reductase activity(GO:0042380) |
12.7 | 12.7 | GO:0015662 | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism(GO:0015662) |
12.1 | 24.2 | GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
11.6 | 46.5 | GO:0019238 | cyclohydrolase activity(GO:0019238) |
11.0 | 33.0 | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884) |
10.5 | 42.1 | GO:0048039 | ubiquinone binding(GO:0048039) |
10.5 | 21.0 | GO:0004072 | aspartate kinase activity(GO:0004072) amino acid kinase activity(GO:0019202) |
9.3 | 37.3 | GO:0016211 | ammonia ligase activity(GO:0016211) |
8.9 | 26.7 | GO:0016794 | GTP diphosphokinase activity(GO:0008728) guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794) |
8.8 | 44.1 | GO:0004645 | phosphorylase activity(GO:0004645) |
8.7 | 26.2 | GO:0009977 | proton motive force dependent protein transmembrane transporter activity(GO:0009977) |
8.6 | 34.3 | GO:0043566 | bent DNA binding(GO:0003681) structure-specific DNA binding(GO:0043566) |
8.4 | 50.5 | GO:0070566 | adenylyltransferase activity(GO:0070566) |
8.3 | 24.8 | GO:0004177 | aminopeptidase activity(GO:0004177) |
8.1 | 24.4 | GO:0005275 | amine transmembrane transporter activity(GO:0005275) |
7.9 | 31.6 | GO:0072341 | modified amino acid binding(GO:0072341) |
7.8 | 23.5 | GO:0015616 | DNA translocase activity(GO:0015616) |
7.8 | 23.4 | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849) |
7.7 | 7.7 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) |
7.7 | 23.0 | GO:0005363 | maltose transmembrane transporter activity(GO:0005363) |
7.6 | 37.8 | GO:0008276 | protein methyltransferase activity(GO:0008276) |
7.5 | 22.6 | GO:0005416 | cation:amino acid symporter activity(GO:0005416) |
7.3 | 14.6 | GO:0008175 | tRNA methyltransferase activity(GO:0008175) |
7.2 | 36.0 | GO:0019829 | cation-transporting ATPase activity(GO:0019829) |
7.2 | 35.9 | GO:0070569 | uridylyltransferase activity(GO:0070569) |
6.8 | 6.8 | GO:0004750 | ribulose-phosphate 3-epimerase activity(GO:0004750) |
6.7 | 33.3 | GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor(GO:0016668) |
6.7 | 6.7 | GO:0070567 | cytidylyltransferase activity(GO:0070567) |
6.6 | 6.6 | GO:0019842 | vitamin binding(GO:0019842) |
6.6 | 85.5 | GO:0016876 | aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876) |
6.5 | 32.5 | GO:0016987 | transcription factor activity, core RNA polymerase binding(GO:0000990) core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987) |
6.4 | 12.9 | GO:0015192 | L-phenylalanine transmembrane transporter activity(GO:0015192) |
6.4 | 19.3 | GO:0004659 | prenyltransferase activity(GO:0004659) |
6.3 | 6.3 | GO:0015079 | potassium ion transmembrane transporter activity(GO:0015079) |
6.2 | 18.7 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
6.2 | 55.9 | GO:0050661 | NADP binding(GO:0050661) |
6.2 | 36.9 | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups(GO:0016765) |
6.1 | 24.6 | GO:0080146 | L-cysteine desulfhydrase activity(GO:0080146) |
6.1 | 12.2 | GO:0015620 | ferric-enterobactin transmembrane transporter activity(GO:0015620) |
6.1 | 18.3 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
6.0 | 17.9 | GO:0019205 | nucleobase-containing compound kinase activity(GO:0019205) |
5.8 | 5.8 | GO:0005198 | structural molecule activity(GO:0005198) |
5.6 | 11.3 | GO:0003746 | translation elongation factor activity(GO:0003746) |
5.5 | 22.1 | GO:0031405 | lipoic acid binding(GO:0031405) |
5.4 | 21.8 | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671) |
5.4 | 10.7 | GO:0000104 | succinate dehydrogenase activity(GO:0000104) |
5.4 | 16.1 | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
5.3 | 16.0 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
5.1 | 25.6 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
5.1 | 10.2 | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor(GO:0016774) |
5.0 | 20.1 | GO:0008861 | formate C-acetyltransferase activity(GO:0008861) |
5.0 | 9.9 | GO:0070181 | small ribosomal subunit rRNA binding(GO:0070181) |
4.9 | 19.7 | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity(GO:0016742) |
4.9 | 9.8 | GO:0016722 | oxidoreductase activity, oxidizing metal ions(GO:0016722) |
4.9 | 9.8 | GO:0016530 | metallochaperone activity(GO:0016530) |
4.8 | 14.5 | GO:0047661 | racemase activity, acting on amino acids and derivatives(GO:0036361) amino-acid racemase activity(GO:0047661) |
4.8 | 19.3 | GO:0047429 | nucleoside-triphosphate diphosphatase activity(GO:0047429) |
4.8 | 14.3 | GO:0008963 | phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963) |
4.7 | 14.1 | GO:0008443 | phosphofructokinase activity(GO:0008443) |
4.7 | 14.1 | GO:0030955 | potassium ion binding(GO:0030955) |
4.6 | 9.3 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
4.4 | 4.4 | GO:0048027 | mRNA 5'-UTR binding(GO:0048027) |
4.0 | 8.0 | GO:1901682 | sulfur compound transmembrane transporter activity(GO:1901682) |
3.9 | 19.4 | GO:1901474 | azole transporter activity(GO:0045118) azole transmembrane transporter activity(GO:1901474) |
3.7 | 7.4 | GO:0016453 | C-acetyltransferase activity(GO:0016453) |
3.7 | 3.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
3.6 | 7.2 | GO:0016880 | acid-ammonia (or amide) ligase activity(GO:0016880) |
3.5 | 7.0 | GO:0008135 | translation factor activity, RNA binding(GO:0008135) |
3.5 | 10.4 | GO:0060590 | ATPase regulator activity(GO:0060590) |
3.3 | 3.3 | GO:0051920 | peroxiredoxin activity(GO:0051920) |
3.2 | 19.4 | GO:0003756 | protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864) |
3.2 | 12.9 | GO:0015299 | solute:proton antiporter activity(GO:0015299) |
3.2 | 9.6 | GO:0015198 | oligopeptide transporter activity(GO:0015198) oligopeptide transmembrane transporter activity(GO:0035673) |
3.2 | 9.6 | GO:0008235 | metalloexopeptidase activity(GO:0008235) |
3.2 | 38.0 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
3.2 | 6.3 | GO:0005319 | lipid transporter activity(GO:0005319) |
3.1 | 6.1 | GO:0008144 | drug binding(GO:0008144) |
3.0 | 33.3 | GO:0043022 | ribosome binding(GO:0043022) |
3.0 | 9.0 | GO:0009927 | histidine phosphotransfer kinase activity(GO:0009927) |
2.9 | 23.6 | GO:0016989 | sigma factor antagonist activity(GO:0016989) |
2.9 | 8.8 | GO:0001098 | basal transcription machinery binding(GO:0001098) bacterial-type RNA polymerase holo enzyme binding(GO:0001108) |
2.9 | 5.8 | GO:0008134 | transcription factor binding(GO:0008134) |
2.9 | 2.9 | GO:0019146 | arabinose-5-phosphate isomerase activity(GO:0019146) |
2.7 | 21.5 | GO:0016866 | intramolecular transferase activity(GO:0016866) |
2.6 | 7.7 | GO:0016778 | diphosphotransferase activity(GO:0016778) |
2.5 | 4.9 | GO:0031992 | energy transducer activity(GO:0031992) |
2.4 | 7.1 | GO:0042927 | siderophore transmembrane transporter activity(GO:0015343) siderophore transporter activity(GO:0042927) |
2.4 | 7.1 | GO:0015654 | tellurite transmembrane transporter activity(GO:0015118) tellurite uptake transmembrane transporter activity(GO:0015654) |
2.3 | 21.0 | GO:0016763 | transferase activity, transferring pentosyl groups(GO:0016763) |
2.3 | 9.3 | GO:0015175 | neutral amino acid transmembrane transporter activity(GO:0015175) |
2.3 | 4.7 | GO:0019171 | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity(GO:0008693) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity(GO:0019171) 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity(GO:0047451) |
2.2 | 6.7 | GO:0008854 | exodeoxyribonuclease V activity(GO:0008854) |
2.2 | 6.5 | GO:0003678 | DNA helicase activity(GO:0003678) ATP-dependent DNA helicase activity(GO:0004003) |
2.2 | 17.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
2.2 | 15.1 | GO:0008408 | 3'-5' exonuclease activity(GO:0008408) |
2.1 | 4.3 | GO:0016803 | hydrolase activity, acting on ether bonds(GO:0016801) ether hydrolase activity(GO:0016803) |
2.1 | 8.4 | GO:0005337 | nucleoside transmembrane transporter activity(GO:0005337) nucleobase-containing compound transmembrane transporter activity(GO:0015932) |
2.1 | 8.2 | GO:0005525 | GTP binding(GO:0005525) |
1.9 | 5.8 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
1.7 | 10.4 | GO:0051287 | NAD binding(GO:0051287) |
1.6 | 8.1 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
1.6 | 1.6 | GO:0015099 | nickel cation transmembrane transporter activity(GO:0015099) |
1.5 | 6.1 | GO:0016846 | carbon-sulfur lyase activity(GO:0016846) |
1.5 | 4.6 | GO:0005048 | signal sequence binding(GO:0005048) |
1.3 | 2.7 | GO:0030551 | cyclic nucleotide binding(GO:0030551) cyclic-di-GMP binding(GO:0035438) |
1.2 | 2.4 | GO:0019534 | toxin transporter activity(GO:0019534) |
1.2 | 2.4 | GO:0004312 | fatty acid synthase activity(GO:0004312) |
1.1 | 3.3 | GO:0008821 | crossover junction endodeoxyribonuclease activity(GO:0008821) endodeoxyribonuclease activity, producing 3'-phosphomonoesters(GO:0016889) |
1.1 | 3.2 | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines(GO:0016814) |
0.9 | 2.8 | GO:0050897 | cobalt ion binding(GO:0050897) |
0.9 | 3.5 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
0.8 | 3.1 | GO:0016841 | ammonia-lyase activity(GO:0016841) |
0.7 | 0.7 | GO:0015173 | aromatic amino acid transmembrane transporter activity(GO:0015173) |
0.7 | 1.4 | GO:0016842 | amidine-lyase activity(GO:0016842) |
0.6 | 1.3 | GO:0008962 | phosphatidylglycerophosphatase activity(GO:0008962) |
0.6 | 6.9 | GO:0008168 | methyltransferase activity(GO:0008168) |
0.6 | 1.7 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
0.4 | 2.1 | GO:0042625 | ATPase coupled ion transmembrane transporter activity(GO:0042625) |
0.2 | 0.7 | GO:0004096 | catalase activity(GO:0004096) |
0.2 | 2.1 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
0.1 | 2.9 | GO:0000287 | magnesium ion binding(GO:0000287) |
0.1 | 0.9 | GO:1901618 | organic hydroxy compound transmembrane transporter activity(GO:1901618) |
0.1 | 1.3 | GO:0016887 | ATPase activity(GO:0016887) |
0.0 | 0.2 | GO:0043023 | ribosomal large subunit binding(GO:0043023) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
8.4 | 16.9 | PID P73PATHWAY | p73 transcription factor network |
7.4 | 22.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
2.6 | 7.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
1.6 | 1.6 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
17.4 | 52.3 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
10.4 | 10.4 | REACTOME METABOLISM OF PROTEINS | Genes involved in Metabolism of proteins |
7.8 | 23.3 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
6.2 | 18.5 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
4.5 | 44.5 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
1.4 | 5.6 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |