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GSE67402: E.coli regulatory changes under long-term starvation

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Results for NagC

Z-value: 0.82

Transcription factors associated with NagC

Gene Symbol Gene ID Gene Info
nagC
nagC NagC DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
nagC0.067.8e-01Click!

Activity profile of NagC motif

Sorted Z-values of NagC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
ptsHI-crr 6.36
ptsI
ptsH
crr
PTS enzyme I
HPr
Enzyme IIAGlc; Crr
dinI 5.28
dinI
DNA damage-inducible protein I
fimB 4.34
fimB
regulator for fimA
nanCM 2.56
nanC
nanM
N-acetylneuraminic acid outer membrane channel
N-acetylneuraminate mutarotase
nanCMS 2.18
nanC
nanM
nanS
N-acetylneuraminic acid outer membrane channel
N-acetylneuraminate mutarotase
probable 9-O-acetyl-N-acetylneuraminate esterase
galP 0.76
galP
galactose:H+ symporter
nagBAC-umpH 0.72
nagB
nagC
umpH
nagA
glucosamine-6-phosphate deaminase
NagC DNA-binding transcriptional dual regulator
UMP phosphatase
N-acetylglucosamine-6-phosphate deacetylase
nagE 0.58
nagE
N-acetylglucosamine PTS permease
feoABC 0.31
feoB
feoC
feoA
Fe2+ transporter FeoB
predicted DNA-binding transcriptional regulator
ferrous iron transport protein A
chiP-ybfN 0.18
chiP
ybfN
chitobiose outer membrane channel
predicted lipoprotein

Network of associatons between targets according to the STRING database.

First level regulatory network of NagC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.1 6.4 GO:0031329 carbohydrate utilization(GO:0009758) regulation of glucose metabolic process(GO:0010906) regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) negative regulation of carbohydrate metabolic process(GO:0045912)
0.5 4.9 GO:0015772 oligosaccharide transport(GO:0015772)
0.3 5.3 GO:0009432 SOS response(GO:0009432)
0.2 0.7 GO:0009175 nucleoside monophosphate catabolic process(GO:0009125) pyrimidine nucleoside monophosphate catabolic process(GO:0009131) ribonucleoside monophosphate catabolic process(GO:0009158) pyrimidine ribonucleoside monophosphate metabolic process(GO:0009173) pyrimidine ribonucleoside monophosphate catabolic process(GO:0009175) UMP metabolic process(GO:0046049) UMP catabolic process(GO:0046050)
0.2 4.3 GO:0006310 DNA recombination(GO:0006310)
0.2 0.8 GO:0015757 galactose transport(GO:0015757)
0.1 0.6 GO:0009254 peptidoglycan turnover(GO:0009254)
0.1 0.3 GO:0072511 divalent metal ion transport(GO:0070838) divalent inorganic cation transport(GO:0072511)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 4.7 GO:0045203 integral component of cell outer membrane(GO:0045203)
0.6 6.4 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.7 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.9 6.4 GO:0008047 enzyme activator activity(GO:0008047)
0.5 5.3 GO:0019899 enzyme binding(GO:0019899)
0.2 0.7 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.2 0.6 GO:0019534 toxin transporter activity(GO:0019534)
0.2 0.8 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.0 0.3 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.2 GO:0022838 substrate-specific channel activity(GO:0022838)