GSE67402: E.coli regulatory changes under long-term starvation
Gene Symbol | Gene ID | Gene Info |
---|---|---|
agaR
|
agaR | AgaR DNA-binding transcriptional repressor |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
agaR | -0.23 | 2.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
agaS-kbaY-agaBCDI | 13.39 |
agaC
agaB
kbaY
agaD
agaI
agaS
|
galactosamine PTS permease (cryptic) - AgaC subunit galactosamine PTS permease (cryptic) - AgaB subunit tagatose-1,6-bisphosphate aldolase 1 subunit KbaY galactosamine PTS permease (cryptic) - AgaD subunit predicted galactosamine-6-phosphate isomerase putative tagatose-6-phosphate aldose/ketose isomerase |
|
kbaZ-agaVWA | 9.99 |
agaA
agaW
agaV
kbaZ
|
predicted truncated N-acetylgalactosamine-6-phosphate deacetylase N-acetyl-D-galactosamine PTS permease (cryptic) - AgaW subunit (pseudogene) N-acetyl-D-galactosamine PTS permease (cryptic) - AgaV subunit tagatose-1,6-bisphosphate aldolase 1 subunit KbaZ |
|
agaR | 8.00 |
agaR
|
AgaR DNA-binding transcriptional repressor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 23.4 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
0.0 | 8.0 | GO:0006355 | regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 23.4 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 23.4 | GO:0051119 | sugar transmembrane transporter activity(GO:0051119) |
0.1 | 8.0 | GO:0003677 | DNA binding(GO:0003677) |