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GSE67402: E.coli regulatory changes under long-term starvation

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Results for AppY

Z-value: 0.35

Transcription factors associated with AppY

Gene Symbol Gene ID Gene Info
appY AppY DNA-binding transcriptional activator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
appY0.301.3e-01Click!

Activity profile of AppY motif

Sorted Z-values of AppY motif

Promoter Log-likelihood Transcript Gene Gene Info
hyaABCDEF 2.99 hydrogenase 1, large subunit
hydrogenase 1, b-type cytochrome subunit
hydrogenase 1, small subunit
protein involved in nickel incorporation into hydrogenase 1 proteins
protein involved in processing of HyaA and HyaB proteins
protein involved in quality control of HyaA
appCBXA 2.33 cytochrome bd-II terminal oxidase subunit I
cytochrome bd-II terminal oxidase subunit II
periplasmic protein with phosphoanhydride phosphatase and multiple inositol-polyphosphate phosphatase activity
small outer membrane protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AppY

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 3.0 GO:0016485 protein processing(GO:0016485)
0.6 2.3 GO:0019646 aerobic electron transport chain(GO:0019646)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 2.3 GO:0070069 cytochrome complex(GO:0070069)
0.6 3.0 GO:0031237 intrinsic component of periplasmic side of plasma membrane(GO:0031237)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.0 GO:0005048 signal sequence binding(GO:0005048)
0.8 2.3 GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) sugar-phosphatase activity(GO:0050308)