GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hipB Links RegulonDB EcoCyc	hipB	HipB antitoxin and DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hipA		0.21	2.9e-01	Click!
hipB		0.21	2.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
hipBA Show fit	3.95		hipA Links RegulonDB EcoCyc Show fit hipB Links RegulonDB EcoCyc Show fit	serine/threonine kinase HipA HipB antitoxin and DNA-binding transcriptional repressor
fadH Show fit	3.53		fadH Links RegulonDB EcoCyc Show fit	2,4-dienoyl-CoA reductase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	4.0	GO:0036289	dormancy process(GO:0022611) peptidyl-serine autophosphorylation(GO:0036289)
0.4	3.5	GO:0006635	fatty acid beta-oxidation(GO:0006635)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	3.5	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628)
0.2	4.0	GO:0000984	bacterial-type RNA polymerase regulatory region sequence-specific DNA binding(GO:0000984) bacterial-type RNA polymerase regulatory region DNA binding(GO:0001017) protein kinase activity(GO:0004672)