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GSE67402: E.coli regulatory changes under long-term starvation

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Results for YjjQ

Z-value: 0.93

Transcription factors associated with YjjQ

Gene Symbol Gene ID Gene Info
yjjQ
yjjQ YjjQ DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
bglJ-0.534.4e-03Click!
yjjQ-0.534.4e-03Click!

Activity profile of YjjQ motif

Sorted Z-values of YjjQ motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
gfcA 21.25
gfcA
predicted protein
ompC 13.19
ompC
outer membrane protein C
ymiA-yciX 6.28
ymiA
yciX
small predicted membrane protein
predicted protein
ybhL 3.96
ybhL
inner membrane protein
yfiR-dgcN-yfiB 3.85
dgcN
yfiR
yfiB
predicted diguanylate cyclase
predicted periplasmic protein involved in swarming motility
predicted outer membrane lipoprotein

Network of associatons between targets according to the STRING database.

First level regulatory network of YjjQ

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.3 13.2 GO:0015748 organophosphate ester transport(GO:0015748)
1.3 3.8 GO:0036460 cellular response to cell envelope stress(GO:0036460)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 13.2 GO:0045203 integral component of cell outer membrane(GO:0045203)
0.4 3.8 GO:0032153 cell division site(GO:0032153)
0.1 27.5 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 4.0 GO:0005886 plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.8 GO:0052621 diguanylate cyclase activity(GO:0052621)
0.0 13.2 GO:0005515 protein binding(GO:0005515)