GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rbsR Links RegulonDB EcoCyc	rbsR	RbsR DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rbsR		0.80	5.9e-07	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
purHD Show fit	8.27		purH Links RegulonDB EcoCyc Show fit purD Links RegulonDB EcoCyc Show fit	AICAR transformylase/IMP cyclohydrolase phosphoribosylamine-glycine ligase
rbsDACBKR Show fit	4.56		rbsK Links RegulonDB EcoCyc Show fit rbsA Links RegulonDB EcoCyc Show fit rbsC Links RegulonDB EcoCyc Show fit rbsB Links RegulonDB EcoCyc Show fit rbsD Links RegulonDB EcoCyc Show fit rbsR Links RegulonDB EcoCyc Show fit	ribokinase ribose ABC transporter - putative ATP binding subunit ribose ABC transporter - membrane subunit ribose ABC transporter - putative periplasmic binding protein ribose pyranase RbsR DNA-binding transcriptional dual regulator
add Show fit	0.91		add Links RegulonDB EcoCyc Show fit	adenosine deaminase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.1	4.6	GO:0050918	positive chemotaxis(GO:0050918)
0.8	9.2	GO:0006164	purine nucleotide biosynthetic process(GO:0006164)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	4.6	GO:1904949	ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)
0.0	9.2	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.1	8.3	GO:0019238	cyclohydrolase activity(GO:0019238)
1.1	4.6	GO:0043211	carbohydrate-transporting ATPase activity(GO:0043211)
0.2	0.9	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines(GO:0016814)