GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
mprA Links RegulonDB EcoCyc	mprA	MprA DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
mprA		0.92	7.7e-12	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nmpC Show fit	9.23		nmpC Links RegulonDB EcoCyc Show fit	outer membrane porin protein; locus of qsr prophage
acrAB Show fit	9.18		acrB Links RegulonDB EcoCyc Show fit acrA Links RegulonDB EcoCyc Show fit	AcrAB-TolC multidrug efflux pump - permease subunit AcrAB-TolC multidrug efflux pump - membrane fusion protein
mprA-emrAB Show fit	7.96		mprA Links RegulonDB EcoCyc Show fit emrA Links RegulonDB EcoCyc Show fit emrB Links RegulonDB EcoCyc Show fit	MprA DNA-binding transcriptional repressor EmrAB-TolC multidrug efflux pump - membrane fusion protein EmrAB-TolC multidrug efflux pump - membrane subunit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.0	9.2	GO:0006855	drug transmembrane transport(GO:0006855)
0.3	8.0	GO:0046677	response to antibiotic(GO:0046677)
0.0	9.2	GO:0006810	transport(GO:0006810)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.6	8.0	GO:0031237	intrinsic component of periplasmic side of plasma membrane(GO:0031237)
0.2	9.2	GO:1902495	transmembrane transporter complex(GO:1902495) transporter complex(GO:1990351)
0.2	9.2	GO:0009279	cell outer membrane(GO:0009279)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.1	9.2	GO:0015307	drug:proton antiporter activity(GO:0015307)
0.7	9.2	GO:0015288	porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.1	8.0	GO:0003677	DNA binding(GO:0003677)