GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
mlc Links RegulonDB EcoCyc	mlc	Mlc DNA-binding transcriptional repressor
mtfA Links RegulonDB EcoCyc	mtfA	Mlc titration factor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
mlc		0.54	4.0e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
ptsG Show fit	22.75		ptsG Links RegulonDB EcoCyc Show fit	glucose PTS permease - PtsG subunit
manXYZ Show fit	0.76		manX Links RegulonDB EcoCyc Show fit manY Links RegulonDB EcoCyc Show fit manZ Links RegulonDB EcoCyc Show fit	mannose PTS permease - ManX subunit mannose PTS permease - ManY subunit mannose PTS permease - ManZ subunit
ptsHI-crr Show fit	0.67		ptsI Links RegulonDB EcoCyc Show fit ptsH Links RegulonDB EcoCyc Show fit crr Links RegulonDB EcoCyc Show fit	PTS enzyme I HPr Enzyme IIAGlc; Crr

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
5.9	23.5	GO:0015758	glucose transport(GO:0015758) glucose import(GO:0046323)
0.3	0.7	GO:0009758	carbohydrate utilization(GO:0009758)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	23.5	GO:0005887	integral component of plasma membrane(GO:0005887)
0.1	0.7	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	22.8	GO:0090563	protein-phosphocysteine-sugar phosphotransferase activity(GO:0090563)
0.1	0.7	GO:0008047	enzyme activator activity(GO:0008047)
0.1	0.8	GO:0015149	hexose transmembrane transporter activity(GO:0015149)