GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
pgrR Links RegulonDB EcoCyc	pgrR	PgrR DNA-binding transcriptional repressor

Promoter	Log-likelihood	Transcript	Gene	Gene Info
ycjY Show fit	3.86		ycjY Links RegulonDB EcoCyc Show fit	predicted hydrolase
ycjY-ymjDC-mpaA Show fit	2.18		ymjD Links RegulonDB EcoCyc Show fit mpaA Links RegulonDB EcoCyc Show fit ycjY Links RegulonDB EcoCyc Show fit ymjC Links RegulonDB EcoCyc Show fit	small protein murein tripeptide amidase A predicted hydrolase predicted oxidoreductase
tyrR Show fit	1.96		tyrR Links RegulonDB EcoCyc Show fit	TyrR DNA-binding transcriptional dual regulator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.2	GO:0006027	aminoglycan catabolic process(GO:0006026) glycosaminoglycan catabolic process(GO:0006027) peptidoglycan catabolic process(GO:0009253) peptide catabolic process(GO:0043171)
0.2	3.9	GO:0051301	cell division(GO:0051301)
0.0	1.8	GO:0045892	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.2	GO:0008235	metalloexopeptidase activity(GO:0008235)
0.0	1.8	GO:0005524	ATP binding(GO:0005524)