GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
cadC Links RegulonDB EcoCyc	cadC	CadC DNA-binding transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cadC		-0.11	5.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
cadC Show fit	14.22		cadC Links RegulonDB EcoCyc Show fit	CadC DNA-binding transcriptional activator
cadBA Show fit	5.96		cadA Links RegulonDB EcoCyc Show fit cadB Links RegulonDB EcoCyc Show fit	lysine decarboxylase 1 lysine:cadaverine antiporter

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	6.0	GO:1903401	organic cation transport(GO:0015695) L-lysine transmembrane transport(GO:1903401)
0.2	14.2	GO:1903508	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	20.2	GO:0005886	plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	6.0	GO:0015491	L-lysine transmembrane transporter activity(GO:0015189) cation:cation antiporter activity(GO:0015491)
0.0	14.2	GO:0005515	protein binding(GO:0005515)