GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rstA Links RegulonDB EcoCyc	rstA	RstA transcriptional regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rstA		0.86	7.5e-09	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
ompF Show fit	27.01		ompF Links RegulonDB EcoCyc Show fit	outer membrane porin F
csgDEFG Show fit	5.20		csgG Links RegulonDB EcoCyc Show fit csgF Links RegulonDB EcoCyc Show fit csgE Links RegulonDB EcoCyc Show fit csgD Links RegulonDB EcoCyc Show fit	curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator
asr Show fit	2.15		asr Links RegulonDB EcoCyc Show fit	acid shock protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.0	27.0	GO:0006855	drug transmembrane transport(GO:0006855)
0.9	5.2	GO:2000144	positive regulation of protein complex assembly(GO:0031334) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.4	2.1	GO:0010043	response to zinc ion(GO:0010043)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
5.4	27.0	GO:0046930	pore complex(GO:0046930)
0.6	5.2	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
0.0	2.1	GO:0042597	periplasmic space(GO:0042597)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
9.0	27.0	GO:0042912	bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912)
0.3	5.2	GO:0000986	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)