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GSE67402: E.coli regulatory changes under long-term starvation

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Results for ExuR

Z-value: 0.87

Transcription factors associated with ExuR

Gene Symbol Gene ID Gene Info
exuR ExuR DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
exuR-0.394.5e-02Click!

Activity profile of ExuR motif

Sorted Z-values of ExuR motif

Promoter Log-likelihood Transcript Gene Gene Info
uxaB 12.76 altronate oxidoreductase
exuT 6.89 hexuronate transporter
lgoR 4.23 predicted DNA-binding transcriptional regulator
uxuAB 3.58 D-mannonate dehydratase
D-mannonate oxidoreductase
uxaCA 2.74 D-altronate dehydratase
D-glucuronate isomerase/D-galacturonate isomerase
exuR 1.77 ExuR DNA-binding transcriptional repressor
uxuR 1.32 UxuR DNA-binding transcriptional repressor

Network of associatons between targets according to the STRING database.

First level regulatory network of ExuR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
6.4 19.1 GO:0006063 uronic acid metabolic process(GO:0006063)
0.5 4.2 GO:0046176 aldonic acid metabolic process(GO:0019520) aldonic acid catabolic process(GO:0046176)
0.4 6.9 GO:0015718 monocarboxylic acid transport(GO:0015718)
0.0 1.8 GO:1902679 negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
0.0 1.3 GO:0097659 transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 6.9 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 12.8 GO:0005829 cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 12.8 GO:0051287 NAD binding(GO:0051287)
0.5 6.9 GO:0015145 monocarboxylic acid transmembrane transporter activity(GO:0008028) monosaccharide transmembrane transporter activity(GO:0015145)
0.4 6.3 GO:0008198 ferrous iron binding(GO:0008198)