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GSE67402: E.coli regulatory changes under long-term starvation

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Results for BetI

Z-value: 0.37

Transcription factors associated with BetI

Gene Symbol Gene ID Gene Info
betI
betI BetI DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
betI-0.115.7e-01Click!

Activity profile of BetI motif

Sorted Z-values of BetI motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
betT 3.70
betT
choline:H+ symporter
betIBA 2.41
betB
betI
betA
betaine aldehyde dehydrogenase
BetI DNA-binding transcriptional repressor
choline dehydrogenase

Network of associatons between targets according to the STRING database.

First level regulatory network of BetI

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.4 GO:0006577 amino-acid betaine metabolic process(GO:0006577)
0.5 3.7 GO:0015696 ammonium transport(GO:0015696)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 3.7 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.7 GO:0015665 ammonium transmembrane transporter activity(GO:0008519) alcohol transmembrane transporter activity(GO:0015665)
0.4 2.4 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)