GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
diaA Links RegulonDB EcoCyc	diaA	DnaA initiator-associating factor for replication initiation

Promoter	Log-likelihood	Transcript	Gene	Gene Info
guaBA Show fit	7.81		guaB Links RegulonDB EcoCyc Show fit guaA Links RegulonDB EcoCyc Show fit	IMP dehydrogenase GMP synthetase
nrdAB-yfaE Show fit	7.06		nrdA Links RegulonDB EcoCyc Show fit nrdB Links RegulonDB EcoCyc Show fit yfaE Links RegulonDB EcoCyc Show fit	ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance
polA Show fit	5.11		polA Links RegulonDB EcoCyc Show fit	DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease
dnaAN-recF Show fit	2.85		dnaA Links RegulonDB EcoCyc Show fit recF Links RegulonDB EcoCyc Show fit dnaN Links RegulonDB EcoCyc Show fit	chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ssDNA and dsDNA binding, ATP binding DNA polymerase III, β subunit
rpoH Show fit	0.95		rpoH Links RegulonDB EcoCyc Show fit	RNA polymerase, sigma 32 (sigma H) factor

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	7.8	GO:0006177	GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037) GTP metabolic process(GO:0046039) guanosine-containing compound biosynthetic process(GO:1901070)
1.3	5.1	GO:0006284	base-excision repair(GO:0006284)
1.2	7.1	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)
0.6	2.8	GO:0000731	DNA synthesis involved in DNA repair(GO:0000731) DNA biosynthetic process(GO:0071897)
0.2	0.9	GO:0001121	transcription from bacterial-type RNA polymerase promoter(GO:0001121)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	7.1	GO:1990204	oxidoreductase complex(GO:1990204)
0.0	15.0	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.4	7.1	GO:0016728	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
2.0	7.8	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
1.7	5.1	GO:0008409	5'-3' exonuclease activity(GO:0008409)
0.2	0.9	GO:0000996	transcription factor activity, core RNA polymerase binding(GO:0000990) core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.1	2.8	GO:1990837	sequence-specific double-stranded DNA binding(GO:1990837)